View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_low_4 (Length: 431)
Name: NF17345_low_4
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 8765402 - 8765275
Alignment:
| Q |
115 |
aatgtaagacaggagacaaccacgcctttgatcagaggcgacggtgcttcagaggtaaccagaccagacaatgttctcaaaaaggcataaaaaatcaaac |
214 |
Q |
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| T |
8765402 |
aatgtaagacaggagacaaccacgcctttgatcagaggcgacggtgcttcagaggtaaccagaccagacaatgttctcaaaaaggcataaaaaatcaaac |
8765303 |
T |
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| Q |
215 |
ttgaaatagtaaagggtcataatggatt |
242 |
Q |
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| T |
8765302 |
ttgaaatagtaaagggtcataatggatt |
8765275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 8765586 - 8765477
Alignment:
| Q |
6 |
acttaaaaatcgtttctttttgacaacttactaaatcaataaaataaatcaagccttttcttttattccctgcattctcaataagctactatcaatcacc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8765586 |
acttaaaaatcgtttctttttgacaacttactaaatcaataaaataaatcaagccttttcttttattccctgcattctcaataagctactatcaatcact |
8765487 |
T |
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| Q |
106 |
gacacagaca |
115 |
Q |
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|||| ||||| |
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| T |
8765486 |
gacatagaca |
8765477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 8765201 - 8765135
Alignment:
| Q |
313 |
gagtaatcacaccaaccaatacagaaaaagcattcactcataacttaatccagcaaccagagtttaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8765201 |
gagtaatcacaccaaccaatacagaaaaagcattcactcataacttcatccagcaaccagagtttaa |
8765135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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