View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_low_5 (Length: 403)
Name: NF17345_low_5
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 190 - 385
Target Start/End: Complemental strand, 47851680 - 47851477
Alignment:
| Q |
190 |
gagtacagtagtttgcatgtgatgatgatattatatatacttacttatgtgatttcatttcatgtttttcatt----------ctttaaccnnnnnnnnn |
279 |
Q |
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| T |
47851680 |
gagtacagtagtttgcatgtgatgatgatattatatata--tacttatgtgatttcatttcatgtttttcatttcatttcattctttaaccaaaaaaaaa |
47851583 |
T |
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| Q |
280 |
nnntcccaatccacacttttctttctctctgcaaactgaatattcctaattcctattcttttctataaaaccattataaattacacacacacattacacc |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47851582 |
aaatcccaatccacacttttctttctctctgcaaactgaatattcctaattcctattcttttctataaaaccattataaattacacacacacattacacc |
47851483 |
T |
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| Q |
380 |
aatttc |
385 |
Q |
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|||||| |
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| T |
47851482 |
aatttc |
47851477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 47851859 - 47851764
Alignment:
| Q |
11 |
cacagagcaggtatgaataatataaagtttatttttgactaaagttgtgaataaagtatatatgagtcttttgacttgcatggaaatgatggaatg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47851859 |
cacagagcaggtatgaataatataaagtttatttttgactaaagttgtgtataaagtatatatgagtcttttgacttgcatggaaatgatggaatg |
47851764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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