View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17345_low_9 (Length: 281)
Name: NF17345_low_9
Description: NF17345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17345_low_9 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 22018715 - 22018836
Alignment:
| Q |
21 |
atgtatactttaggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactcct |
120 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |
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| T |
22018715 |
atgtatactttaggcaaggaagttggttcaacaccaatttcaactaattcagcccaaatatctccaccattagcactcttactctatttgaccaactcct |
22018814 |
T |
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| Q |
121 |
ctgagctcattttaaacacctc |
142 |
Q |
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|||||||||||||||||||||| |
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| T |
22018815 |
ctgagctcattttaaacacctc |
22018836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 20714287 - 20714372
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaact |
117 |
Q |
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| T |
20714287 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcatcactagaactcttattctgtttgaccaact |
20714372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 18126 - 18212
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc |
118 |
Q |
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| T |
18126 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc |
18212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 22527988 - 22528074
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc |
118 |
Q |
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| T |
22527988 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc |
22528074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 25990609 - 25990695
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc |
118 |
Q |
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| T |
25990609 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc |
25990695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 33094582 - 33094496
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc |
118 |
Q |
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||||||||||||| |||||||||||| ||||| || | |||||||| |||| || || | ||||||| |||||||||||||||| |
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| T |
33094582 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc |
33094496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 13173176 - 13173262
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc |
118 |
Q |
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||||||||||||| |||||||||||| ||||| || | |||||||| |||| || || | ||||||| |||||||||||||||| |
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| T |
13173176 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc |
13173262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 20986668 - 20986582
Alignment:
| Q |
32 |
aggcaaggaagctggttcaacaccaatttcgactaattcagcccaaatatctccaccatcaccactcttactctgtttgaccaactc |
118 |
Q |
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||||||||||||| |||||||||||| ||||| || | |||||||| |||| || || | ||||||| |||||||||||||||| |
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| T |
20986668 |
aggcaaggaagcttcttcaacaccaatctcgaccaagttagcccaaacatcttcagcactagaactcttattctgtttgaccaactc |
20986582 |
T |
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