View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17346_high_1 (Length: 393)
Name: NF17346_high_1
Description: NF17346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17346_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 552589 - 552325
Alignment:
| Q |
1 |
ttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcatatccatcggggtttaaatcttatttcctgagttg |
100 |
Q |
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| T |
552589 |
ttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcatatccatcggggtttaaatcttatttcctgagttg |
552490 |
T |
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| Q |
101 |
tatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaatattggcatctttctgcac--gccaacatattatgt |
198 |
Q |
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| T |
552489 |
tatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaatattggcatctttctgcacgtgccaacatattatgt |
552390 |
T |
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| Q |
199 |
ctctggttta--------------tgttatgttaagattatgatttgattcgctctttgttcaac |
249 |
Q |
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| T |
552389 |
ctctggtttatgaaggattgtaattgttatgttaagattatgatttgattcgctctttgttcaac |
552325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 552263 - 552215
Alignment:
| Q |
326 |
gctgaattggtgtcattgttaatgcatttttgttggattactacaaagt |
374 |
Q |
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| T |
552263 |
gctgaattggtgtcattgttaatgcatttttgttggattactacaaagt |
552215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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