View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17346_high_2 (Length: 343)

Name: NF17346_high_2
Description: NF17346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17346_high_2
NF17346_high_2
[»] chr7 (13 HSPs)
chr7 (13-327)||(27147028-27147342)
chr7 (78-316)||(27157957-27158189)
chr7 (19-206)||(27133982-27134172)
chr7 (89-206)||(27165508-27165625)
chr7 (89-206)||(27220198-27220315)
chr7 (95-206)||(27281666-27281777)
chr7 (89-200)||(27304360-27304471)
chr7 (95-206)||(27296134-27296245)
chr7 (95-206)||(27271555-27271666)
chr7 (119-206)||(27243101-27243188)
chr7 (95-206)||(27249046-27249157)
chr7 (89-206)||(27301500-27301620)
chr7 (129-206)||(27312620-27312697)
[»] chr1 (2 HSPs)
chr1 (119-185)||(14889948-14890014)
chr1 (126-200)||(14884282-14884356)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 27147028 - 27147342
Alignment:
Q  13 aatatgaaacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaaattgcattcatctctacacacttgaattgcatttcctct 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27147028 aatataaaacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaaattgcattcatctctacacacttgaattgcatttcctct 27147127  T
Q  113 atcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgcagaccc 212  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | |||||| |||| ||||||||||||||||||||||||||    
T  27147128 atcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgcttgcttttggccattccattagcaaatgcagaccc 27147227  T
Q  213 tgaccctaaatgtaagaacgtggcagaaagtataataccatgcgttgagtacattatgacccctgatgcatccaacccccctgcaccatgttgtaatggg 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27147228 tgatcctaaatgtaagaacgtggcagaaagtataataccatgcgttgagtacattatgacccctgatgcatccaacccccctgcaccatgttgtaatggg 27147327  T
Q  313 atgaccagtttagct 327  Q
    |||||||||||||||    
T  27147328 atgaccagtttagct 27147342  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 78 - 316
Target Start/End: Original strand, 27157957 - 27158189
Alignment:
Q  78 cattcatctctacacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgc 177  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || | |||    
T  27157957 cattcatctccacacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttgtctgtgatgtgc 27158056  T
Q  178 ttggttttagccattccattagcaaatgcagaccctgaccctaaatgtaagaacgtggcagaaagtataataccatgcgttgagtacattatgacccctg 277  Q
    |||||||| |||||||||||||||||||      ||| |||| | |||| | |||||| ||||| |||| |||||||| |||||||||||| ||||||||    
T  27158057 ttggttttggccattccattagcaaatg------ctggcccttactgtagggacgtggtagaaactatactaccatgcattgagtacattacgacccctg 27158150  T
Q  278 atgcatccaacccccctgcaccatgttgtaatgggatga 316  Q
     |||||||| || ||||||||||||||| ||||||||||    
T  27158151 gtgcatccaccctccctgcaccatgttgcaatgggatga 27158189  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 27133982 - 27134172
Alignment:
Q  19 aaacattgggagcaaagttgaattcgtgatatcttctcactctataaatacttaa--attgcattcatctctacacac--ttgaattgcatttcctctat 114  Q
    |||||||| || |||||||||||| ||| |||||||| ||||||||||||||| |  ||| |||||||||| ||||||  |||||| |||||||||||||    
T  27133982 aaacattgtgaccaaagttgaattagtggtatcttctaactctataaatacttgatcattccattcatctccacacacacttgaatagcatttcctctat 27134081  T
Q  115 caaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc 206  Q
    |||| | |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||||||| |||||||    
T  27134082 caaa-tctccaaaccatggctagctcaatgcttgttaagattacttgtatgtctatgctatgcttggttttggtcattccattatcaaatgc 27134172  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 27165508 - 27165625
Alignment:
Q  89 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc 188  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| || ||||||||||||| ||    
T  27165508 acacaattgaattgcatttcctctatcaaaatttccaaatcatggctacctcaatgcttgttaagatcacttgtttgtctgtgatatgcttggttttggc 27165607  T
Q  189 cattccattagcaaatgc 206  Q
    |||||||||||| |||||    
T  27165608 cattccattagccaatgc 27165625  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 27220198 - 27220315
Alignment:
Q  89 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc 188  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| |     
T  27220198 acacacttgaatagcatttcctctatcaaaatttccaaatcatggctagttcaatgcttttgaaggttacttgtttggctatgatatgcttggttttggg 27220297  T
Q  189 cattccattagcaaatgc 206  Q
    |||||||||||| |||||    
T  27220298 cattccattagccaatgc 27220315  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 27281666 - 27281777
Alignment:
Q  95 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 194  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | ||||||    
T  27281666 ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattcc 27281765  T
Q  195 attagcaaatgc 206  Q
    | |||| |||||    
T  27281766 actagccaatgc 27281777  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 27304360 - 27304471
Alignment:
Q  89 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagc 188  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| | ||  ||||||| ||| ||||| ||||||||||||| |     
T  27304360 acacacttgaattgcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaagttacttgcttggctatgatatgcttggttttggg 27304459  T
Q  189 cattccattagc 200  Q
    ||||||| ||||    
T  27304460 cattccactagc 27304471  T

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Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 27296134 - 27296245
Alignment:
Q  95 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 194  Q
    ||||||||||||||||||   |||||||||||||||||||||| ||||||||| | ||| ||||||||||| ||| | ||||||||||||| | ||||||    
T  27296134 ttgaattgcatttcctcttcaaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctacgatatgcttggttttgggcattcc 27296233  T
Q  195 attagcaaatgc 206  Q
    | |||| |||||    
T  27296234 actagccaatgc 27296245  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 27271555 - 27271666
Alignment:
Q  95 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 194  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| ||||| ||| | ||| ||||||||||| ||||| |||||||||||||   ||||||    
T  27271555 ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatccttgtcaaggttacttgtttggctatgatatgcttggttttgagcattcc 27271654  T
Q  195 attagcaaatgc 206  Q
    | |||| |||||    
T  27271655 actagccaatgc 27271666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 27243101 - 27243188
Alignment:
Q  119 atttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc 206  Q
    ||||||||||||||||||| ||||||||| | ||| ||||||||||| ||||| ||||||||||||| | ||||||| |||| |||||    
T  27243101 atttccaaatcatggctagttcaatgcttgtcaaggttacttgtttggctatgatatgcttggttttgggcattccactagccaatgc 27243188  T

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Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 27249046 - 27249157
Alignment:
Q  95 ttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattcc 194  Q
    ||||||| ||||||||||   |||||||||||||||||||||| |||||| || | ||| ||||||||||| ||||| ||||||| ||||| | ||||||    
T  27249046 ttgaattacatttcctcttcgaaaatttccaaatcatggctagttcaatgtttgtcaaggttacttgtttggctatgatatgcttagttttgggcattcc 27249145  T
Q  195 attagcaaatgc 206  Q
    | |||| |||||    
T  27249146 actagctaatgc 27249157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 27301500 - 27301620
Alignment:
Q  89 acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgctt---cttaagattacttgtttgtctatgctatgcttggtttt 185  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||    | ||  ||||||| ||| ||||| |||||||||||||    
T  27301500 acacacttgaatagcatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtgatcaaagttacttgcttggctatgatatgcttggtttt 27301599  T
Q  186 agccattccattagcaaatgc 206  Q
       |||||||||||| |||||    
T  27301600 gtgcattccattagccaatgc 27301620  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 27312620 - 27312697
Alignment:
Q  129 catggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagcaaatgc 206  Q
    |||||||||||||||| || | ||||||||||  ||| ||||| ||||||||||||| | || ||| ||||| |||||    
T  27312620 catggctagctcaatgtttgtcaagattactttcttggctatgatatgcttggttttgggcactcccttagccaatgc 27312697  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 14890014 - 14889948
Alignment:
Q  119 atttccaaatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggtttt 185  Q
    ||||||||||||||||||| |||||||||   ||| ||||||||||| ||||| |||||||||||||    
T  14890014 atttccaaatcatggctagttcaatgcttaccaaggttacttgtttggctatgatatgcttggtttt 14889948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 14884356 - 14884282
Alignment:
Q  126 aatcatggctagctcaatgcttcttaagattacttgtttgtctatgctatgcttggttttagccattccattagc 200  Q
    |||||||||||| |||||||||   ||| ||||||||||| ||||| ||||||||||||| | ||||||| ||||    
T  14884356 aatcatggctagttcaatgcttaccaaggttacttgtttggctatgttatgcttggttttgggcattccaatagc 14884282  T

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