View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17346_high_3 (Length: 312)
Name: NF17346_high_3
Description: NF17346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17346_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 121 - 296
Target Start/End: Complemental strand, 30073029 - 30072854
Alignment:
| Q |
121 |
ccttgttcaagtgcatcccgagaaagcttaaggttatgaatagacttcaataaaggattatcaacatcgagcttcaattctgagtcacgtgcatcactaa |
220 |
Q |
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| T |
30073029 |
ccttgttcaagtgcatcccgagaaagcttaaggttatgaatagacttcaataaaggatcatcaacatcgagcttcaattctgagtcacgtgcatcactaa |
30072930 |
T |
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| Q |
221 |
gtaaatcttgatcactatcttgatcgtttttctgaaaatcatctttattcaaaaccctagcatttggattacaact |
296 |
Q |
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| T |
30072929 |
gtaaatcttgatcactatcttgatcgtttttctgacaatcatctttattcaaaaccctagcatttggattacaact |
30072854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 26627509 - 26627565
Alignment:
| Q |
237 |
atcttgatcgtttttctgaaaatcatctttattcaaaaccctagcatttggattaca |
293 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
26627509 |
atcttgatcatttttctaaaaatcatctttattcaaaaccctagcatttagattaca |
26627565 |
T |
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