View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17346_low_5 (Length: 227)
Name: NF17346_low_5
Description: NF17346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17346_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 24181677 - 24181781
Alignment:
| Q |
115 |
gtagtgggaaaaagaggtacaggacaaaattcagcaaggaacagaaagagaagatgcatggtttttctgagaaattgggttggaaaatgcaaaagggtga |
214 |
Q |
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| T |
24181677 |
gtagtgggaaaaagaggtacaggacaaaattcagcaaggagcagaaagagaagatgcatggtttttctgagaaattgggttggaaaatgcaaaagagtga |
24181776 |
T |
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| Q |
215 |
tgatg |
219 |
Q |
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||||| |
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| T |
24181777 |
tgatg |
24181781 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 24181591 - 24181646
Alignment:
| Q |
23 |
aaaccatcttcaaagaaatctcaattttgcttcatctgttgttaagcttgaaagcc |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24181591 |
aaaccatcttcaaagaaatctcaattttgcttcatctgttgttaagcttgagagcc |
24181646 |
T |
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