View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17347_high_1 (Length: 375)
Name: NF17347_high_1
Description: NF17347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17347_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 5796601 - 5796539
Alignment:
| Q |
297 |
cttaacttaatatattgaataaattggtttatattgaaatttatttgatactatggatctgtg |
359 |
Q |
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| T |
5796601 |
cttaacttaatatattgaataaattggtttatattgaaatttatttgatactatggatctgtg |
5796539 |
T |
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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 21878609 - 21878681
Alignment:
| Q |
45 |
aaatagaagttctagcgtttgccaaattgttgagcatgttcatggcagataaagtggttagaaacaacatgtc |
117 |
Q |
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| T |
21878609 |
aaatagaagttctagcgtttgccatattgttgagcatgttcatggcagataaagtgggtggaaacaacatgtc |
21878681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 21878554 - 21878596
Alignment:
| Q |
15 |
aatattgaccataacaaacgcactatctataaatagaagttct |
57 |
Q |
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| T |
21878554 |
aatatcgaccataacaaacgcactatctataaatagaagttct |
21878596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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