View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17347_low_1 (Length: 663)
Name: NF17347_low_1
Description: NF17347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17347_low_1 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 262 - 663
Target Start/End: Original strand, 11379847 - 11380244
Alignment:
| Q |
262 |
gcttgctctttgcgtctcgtgcagatgtagctgtaataaaatattggctgttnnnnnnnntggaaatcatgtagattaattaactcaattattaacatta |
361 |
Q |
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| T |
11379847 |
gcttgctctttgcgtctcgtgcagatgtagccgtaataaaatattggctgttaaaaaaaatggaaatcatgtagattaattaactcaattattaacatta |
11379946 |
T |
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| Q |
362 |
ttatcgagtaaaatcaaattaaagaacgttgaattttttga-tcatatgttatggataaatggaaatgtttttcactgtgcttttatttcattattt-ga |
459 |
Q |
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| T |
11379947 |
ttatcgagtaaaat-----taaagaacgttgaattttttggctcatatgttatggataa-tggaaatgtttttcactgtgcttttatttcattattttga |
11380040 |
T |
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| Q |
460 |
tattagacctctcttgttgtgttaacttttttaaaattcttgtgtttgtacaatgcaaatgtgttcccattagattgaatcttgtaaaattgacaattga |
559 |
Q |
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| T |
11380041 |
tattagacctttcttgttgtgttaactttattaaaatacttgtgtgtgtacaatgcaaatgtgttcccattagattgaatcttgtaagattgacaattga |
11380140 |
T |
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| Q |
560 |
agcaacaaagaattgaaaactacgtaagaaattgcaacaaacacaaacagacagtagagaatctgaatttgattttcctcgaaaagaaattctgaatcag |
659 |
Q |
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| T |
11380141 |
agcaacaaagaattgaaaactacgtaagaaattgcaacaaacacaaacagacagtagagaatctgaatatgattttcctcgaaaagaaattttgaatctg |
11380240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 11379612 - 11379695
Alignment:
| Q |
22 |
ttacatcaccaccgcgcctggaatctgtttgtcctactcctgttgtgattttgctgggcatgggttagtggggtgtggctgacc |
105 |
Q |
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| T |
11379612 |
ttacatcaccaccgcgcctggaatctgtttgtcctactcctgttgtgattttgctgggcatgagttagtggggtgtggctgacc |
11379695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 527 - 636
Target Start/End: Original strand, 11452187 - 11452300
Alignment:
| Q |
527 |
cattagattgaatcttgtaaaattgacaattgaagcaacaaaga--attgaaaactacgtaagaaattgcaacaaacacaaacagacag--tagagaatc |
622 |
Q |
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| T |
11452187 |
cattagattgaatcttgtaagattgaaaattgcagcaacaaatataattgaaaactgcataagaaattgcaacaaacacaaacaaacagattagagaatc |
11452286 |
T |
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| Q |
623 |
tgaatttgattttc |
636 |
Q |
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| T |
11452287 |
tgaatcttattttc |
11452300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 11375772 - 11375819
Alignment:
| Q |
58 |
ctcctgttgtgattttgctgggcatgggttagtggggtgtggctgacc |
105 |
Q |
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| T |
11375772 |
ctcctgttgtgattttgctgggcatgggttagtggggtgtggctgacc |
11375819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 11379774 - 11379813
Alignment:
| Q |
184 |
ctacagctttgagttcagatgttccgtttatacacggcgt |
223 |
Q |
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| T |
11379774 |
ctacagctttgagttcggatgttccgtctatacacggcgt |
11379813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 639
Target Start/End: Original strand, 35400634 - 35400729
Alignment:
| Q |
548 |
attgacaattgaagcaacaaaga--attgaaaactacgtaagaaattgcaacaaacacaaacagac--agtagagaatctgaatttgattttcctc |
639 |
Q |
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| T |
35400634 |
attgaaaattgcagcaacaaagattattgaaaactgcataagaaattgcaacaaacacaaacaaacatagtagagaatttggatatggttttcctc |
35400729 |
T |
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