View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17347_low_3 (Length: 315)
Name: NF17347_low_3
Description: NF17347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17347_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 10148594 - 10148871
Alignment:
| Q |
15 |
tctatctctagattctttaagttgtactattttggagactccgcctaacgaactccataaattactttttgatgatatttttgggggttgtgtatactta |
114 |
Q |
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| T |
10148594 |
tctatctctagattctttaagttgtactattttggagactccgcctaacaaactccataaattattttttgatgatatttttgggggttgtgtatattta |
10148693 |
T |
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| Q |
115 |
gtaatgtcccactagtttcttagtctttctttcgggcctttggccctcttttgc-nnnnnnnnnnnnnnnnntcatatcttaaagttttatctagaacta |
213 |
Q |
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| T |
10148694 |
gtaatgtcacactagtttcttagtctttctttcgggcctttggtcctcttttgcaaaaaaaaaaaacaaaaatcatatcttaaagttttctctagaacta |
10148793 |
T |
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| Q |
214 |
agcgaagctttacaaaaatttcaaatagcaccaaaattgacattaaaattacttctgatgccttcaaccacttgctta |
291 |
Q |
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| T |
10148794 |
agcgaagctttacaaaaagttcaaatagcaccaaaattgacattaaaattacttctaatgccttcaaccacttgctta |
10148871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 3674900 - 3674860
Alignment:
| Q |
15 |
tctatctctagattctttaagttgtactattttggagactc |
55 |
Q |
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| T |
3674900 |
tctatctttagactctttaagttgtactattgtggagactc |
3674860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 52484064 - 52484101
Alignment:
| Q |
15 |
tctatctctagattctttaagttgtactattttggaga |
52 |
Q |
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| T |
52484064 |
tctatctctggattctttaagttgtactattgtggaga |
52484101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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