View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17347_low_4 (Length: 293)
Name: NF17347_low_4
Description: NF17347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17347_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 9218766 - 9218492
Alignment:
| Q |
1 |
tgctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218766 |
tgctttatcatatctacattcagctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtt |
9218667 |
T |
|
| Q |
101 |
tccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218666 |
tccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcgacaatggtacaaggaactcttggatacttagatccagagtatatgcaaa |
9218567 |
T |
|
| Q |
201 |
cacatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
275 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218566 |
cacatcaattaaccgaaaaaagtgatgtgtatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
9218492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 9170682 - 9170409
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9170682 |
gctttatcgtatctacattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagttt |
9170583 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
9170582 |
ccgacttcggagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaac |
9170483 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
275 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9170482 |
acataaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaac |
9170409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 9118596 - 9118869
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9118596 |
gctttatcgtatctacattcatctgcatcatttccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
9118695 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
9118696 |
ccgatttcggagcttccaaattggttccacttgatcaaaccgagatagcaacagtggtacaaggaacacttggatacttagacccagagtacatgcaaac |
9118795 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9118796 |
gcatcaattaaccgagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaac |
9118869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 9200249 - 9199976
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9200249 |
gctttatcatatctacattcagctgcatcaattccaattatccacagagatgttaagagtaccaacattctcttggatgacaattacaccgcaaaagttt |
9200150 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
9200149 |
ctgactttggagcttccagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaac |
9200050 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgccaaac |
275 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
9200049 |
acatcaactaaccgagaaaagtgatgtttatagctttggagtggttcttgcagagcttctaacaggtgacaaac |
9199976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 9161856 - 9161597
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||| || ||| |||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
9161856 |
gctttatcgtatttacattcatctgcatcaatacctattatccatagagatgttaagagtaccaacattctcttagatgacaattacaatgcaaaagttt |
9161757 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
| || || |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
9161756 |
ctgattttggagcttcgaggttggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggttacttagatccggagtatatgcaaac |
9161657 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttct |
261 |
Q |
| |
|
||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9161656 |
acatcaactaacagagaaaagtgatgtttatagctttggtgtagttcttgcagagcttct |
9161597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 9155944 - 9155679
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||| || |||||||||||| |||||||||| || ||||| ||||||||||| || |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
9155944 |
gctttatcgtatctacattcatctgcatcaataccgattatccatagagatgtcaaaagtaccaacattctcttggatgacaattacacagcgaaagttt |
9155845 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
|||| || |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9155844 |
ccgattttggagcttcgaggttagttccacttgatcaaaccgagatagcaacaatggttcaaggaactcttggatacctagatccagagtatatgcaaac |
9155745 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg |
267 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
9155744 |
tcatcaattaaccgagaaaagtgatgtctatagctttggagtagtgcttgcggagcttctgacagg |
9155679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 9229650 - 9229388
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||| ||||||||||||||| ||||||| | |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9229650 |
gctttatcatatctacattcatctgcatccttaccaattatccatagagatgtcaaaagtgccaacattctcttggatgacaattacactgcaaaagtgt |
9229551 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
| || || || |||||||||||||||||||||||||| || |||||| || ||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
9229550 |
ctgattttggtgcttcaagattggttccacttgatcatactatgatagccactgtggtacaaggaactcttggctatttagatccagaatatatgcaaac |
9229451 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaac |
264 |
Q |
| |
|
||| ||| |||| || |||||||||||||||||||| || ||||| || |||||||| ||||| |
|
|
| T |
9229450 |
acaccaactaacagagaaaagtgatgtttatagcttcggggtagtactggcagagctcctaac |
9229388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 1868608 - 1868862
Alignment:
| Q |
2 |
gctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagttt |
101 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| || || || ||||||||||| |||||| ||||||||||| ||| | |||| || ||||| | |
|
|
| T |
1868608 |
gctttgtcatatctacattcatatgcctcaatacccatcatccatagagatgtcaagagtgataacattctcttagatagaaccaacaccgccaaagtat |
1868707 |
T |
|
| Q |
102 |
ccgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
1868708 |
cggattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaac |
1868807 |
T |
|
| Q |
202 |
acatcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagag |
256 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1868808 |
aagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagag |
1868862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 256
Target Start/End: Original strand, 1843000 - 1843253
Alignment:
| Q |
3 |
ctttgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttc |
102 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| || ||||||||||| |||||| ||||||||||| ||| | |||| || ||||| || |
|
|
| T |
1843000 |
ctttgtcatatctacattcatatgcctcaataccaataatccatagagatgtcaagagtgataacattctcttagatagaaccaacacagccaaagtatc |
1843099 |
T |
|
| Q |
103 |
cgacttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaaca |
202 |
Q |
| |
|
|| || ||||||||||||||||||||| |||||||||| || ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
1843100 |
agattttggagcttcaagattggttccaattgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaaca |
1843199 |
T |
|
| Q |
203 |
catcaattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagag |
256 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
1843200 |
agtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagag |
1843253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 1857014 - 1857259
Alignment:
| Q |
6 |
tgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttccga |
105 |
Q |
| |
|
||||||||||||||||| ||| |||| || || || ||||||||||| |||||| ||||||||||| |||| | |||| || ||||| || || |
|
|
| T |
1857014 |
tgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcgga |
1857113 |
T |
|
| Q |
106 |
cttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaacacat |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||| | |
|
|
| T |
1857114 |
ttttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagt |
1857213 |
T |
|
| Q |
206 |
caattaaccgaaaaaagtgatgtttatagctttggagtagttcttg |
251 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1857214 |
caattaactgaaaaaagtgatgtctatagctttggagtagttcttg |
1857259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 264
Target Start/End: Complemental strand, 1816030 - 1815772
Alignment:
| Q |
6 |
tgtcatatctacattcagctgcatcaattccaattattcatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttccga |
105 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||| | ||||||||||| |||| | |||| || ||||| || || |
|
|
| T |
1816030 |
tgtcatatctgcattcagctgcctcaatacccattatccatagagatgtcaagagtgctaacattctcttagatggaaccaacaccgctaaagtgtcaga |
1815931 |
T |
|
| Q |
106 |
cttcggagcttcaagattggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggatacttagatccagagtatatgcaaacacat |
205 |
Q |
| |
|
|| ||||| ||||| ||| |||||||||||||||| || |||| |||||||| ||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
1815930 |
ttttggagcatcaaggttgattccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttggatccagagtatatgcaaacaagc |
1815831 |
T |
|
| Q |
206 |
caattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaac |
264 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
1815830 |
caattaactgagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaac |
1815772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 41703857 - 41703820
Alignment:
| Q |
206 |
caattaaccgaaaaaagtgatgtttatagctttggagt |
243 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
41703857 |
caattaaccgataaaagtgatgtttatagctatggagt |
41703820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 40573369 - 40573430
Alignment:
| Q |
206 |
caattaaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacagg |
267 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||||||||| || |||||||| || ||||| |
|
|
| T |
40573369 |
caattaacagagaagagtgatgtttatagatttggagtagtcctagcagagctactgacagg |
40573430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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