View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17347_low_8 (Length: 203)
Name: NF17347_low_8
Description: NF17347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17347_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 52651241 - 52651086
Alignment:
| Q |
34 |
caactttgcagattaatattcgcttcactttttattcccacctcaatttaatgttaaacggacttcagtctcttagatgtccaaagcatgtgattgtaga |
133 |
Q |
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| T |
52651241 |
caactttgcagattaatattcgcttcactttttattcccacctcaatttaatgttaaacggacttcagtctcttagatgtccaaagcatgtgattgtaga |
52651142 |
T |
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| Q |
134 |
ttacagtttggacatgactcatgtactacacaggaaagaggagcgttgaggaggat |
189 |
Q |
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| T |
52651141 |
ttacagtttggacatgactcatgtactacacaaaaaagaggagcgttgaggaggat |
52651086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 31682370 - 31682336
Alignment:
| Q |
33 |
ccaactttgcagattaatattcgcttcacttttta |
67 |
Q |
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| T |
31682370 |
ccaactttgcagattaatattcgtttcacttttta |
31682336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 31896062 - 31896096
Alignment:
| Q |
33 |
ccaactttgcagattaatattcgcttcacttttta |
67 |
Q |
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| T |
31896062 |
ccaactttgcagattaatattcgtttcacttttta |
31896096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 31900646 - 31900680
Alignment:
| Q |
33 |
ccaactttgcagattaatattcgcttcacttttta |
67 |
Q |
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| T |
31900646 |
ccaactttgcagattaatattcgtttcacttttta |
31900680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 31916355 - 31916389
Alignment:
| Q |
33 |
ccaactttgcagattaatattcgcttcacttttta |
67 |
Q |
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| T |
31916355 |
ccaactttgcagattaatattcgtttcacttttta |
31916389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 31950003 - 31950037
Alignment:
| Q |
33 |
ccaactttgcagattaatattcgcttcacttttta |
67 |
Q |
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| T |
31950003 |
ccaactttgcagattaatattcgtttcacttttta |
31950037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 52651275 - 52651245
Alignment:
| Q |
34 |
caactttgcagattaatattcgcttcacttt |
64 |
Q |
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| T |
52651275 |
caactttgcagattaatattcgcttcacttt |
52651245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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