View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_high_1 (Length: 617)
Name: NF17348_high_1
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 17 - 600
Target Start/End: Complemental strand, 55144384 - 55143801
Alignment:
| Q |
17 |
ataggaatatatgtgattctcatttatttgcataagagccaaccaactgaaggacacttttgtttctcaagtcaaacgatatttcttgcttcacggttgt |
116 |
Q |
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| T |
55144384 |
ataggaatatatgtgattctcatttatttgcataagagccaaccaactgaaggacacttttgtttctcaagtcaaacgatatttcttgcttcacggttgt |
55144285 |
T |
|
| Q |
117 |
ttggttcccatccagcttcgaatatcatttgagagtcataaaaccaccaattaaatcaaagataccttttgtcaaaaattatattcaaagatacctgaca |
216 |
Q |
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| T |
55144284 |
ttggttcccatccagcttcgaatatcatttgagagtcataaaaccaccaattaaatcaaagataccttttgtcaaaaattatattcaaagatacctgaca |
55144185 |
T |
|
| Q |
217 |
agttacaacacatgtattgattcaaatagagataactcaaatccctcaatattgattgtaatatataattttgtaaaaacatgggtacccctaaaaattg |
316 |
Q |
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| T |
55144184 |
agttacagcacatgtattgatccaaatagagataactcaaatccctcaatattgaatgcaatatataattttgtaaaaacatgggtacccctaaaaattg |
55144085 |
T |
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| Q |
317 |
aagggtactttacaatctaactgaaatacaaatttatacaaatgtaggtgttgggaggtagaatttgaaatcgtgcttcacatatgattaaggaacaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55144084 |
aagggtactttacaatctaactgaaatacaaatttatacaaatgtaggtgttgggaggtagaatttgaaatcgtgcttcacatatgattaaggaacaatg |
55143985 |
T |
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| Q |
417 |
ttaaagaaagttaaaaagtaattcacatttgagcagcaagagagccagccaaacagttagggatatcggtaatggtaaattttgatttgaagtataggtc |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55143984 |
ttaaagaaagttaaaaagtaattcacatttgagcagcaagagagccagccaaacagttagggatatcggtaatggtaaattttgatttgaaatataggtc |
55143885 |
T |
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| Q |
517 |
gatacttcatagtaacatcacaagagtattccggaagatgatatttgaaatgattctgcacgtatgaatggaaataatggtcga |
600 |
Q |
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| T |
55143884 |
gatacttcatagtaacatcacaagagtattcctgaagatgatatttgagatgagtctacacctatgaatggaagtaatggtcga |
55143801 |
T |
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