View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_high_17 (Length: 230)
Name: NF17348_high_17
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_high_17 |
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| [»] scaffold0718 (1 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 3584704 - 3584911
Alignment:
| Q |
5 |
ttggaaatgcttagagtaccagaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagctacatagtattgctcaaac |
104 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584704 |
ttggaaatgcttagagtaccaaaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagctacatagtattgctcaaac |
3584803 |
T |
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| Q |
105 |
aatgatactcacatatgaagc-nnnnnnntatagtaaaaaggggaaatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgatta |
203 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584804 |
aatgatactcacatatgaagcaaaaaaaatatagtaaaaaggggaaatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgatta |
3584903 |
T |
|
| Q |
204 |
tgatgagt |
211 |
Q |
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|||||||| |
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| T |
3584904 |
tgatgagt |
3584911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 23690278 - 23690325
Alignment:
| Q |
39 |
gtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct |
86 |
Q |
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| T |
23690278 |
gtgtgtatgaaaatatgaccaatagtctgtagagaaccaatgcaagct |
23690325 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 2878262 - 2878212
Alignment:
| Q |
36 |
ctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct |
86 |
Q |
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| T |
2878262 |
ctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagct |
2878212 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 20132569 - 20132515
Alignment:
| Q |
32 |
gtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct |
86 |
Q |
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||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| |
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| T |
20132569 |
gtgtctcgtgtgtatgacattatgatcaatagtctgtagagaaccaatgcaagct |
20132515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 10020650 - 10020596
Alignment:
| Q |
14 |
cttagagtaccagaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctat |
68 |
Q |
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| T |
10020650 |
cttagagtaccagcaaatgtgcctcgtgtgtaagaaagtacgaccaatagtctat |
10020596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 10034316 - 10034267
Alignment:
| Q |
13 |
gcttagagtaccagaaaatgtgtctcgtgtgtatgaaagtatgaccaata |
62 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||| |||||||| |
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| T |
10034316 |
gcttagagtaccagaaaatgtgcctcgtgtgtaagaaagtacgaccaata |
10034267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0718 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0718
Description:
Target: scaffold0718; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 1260 - 1210
Alignment:
| Q |
36 |
ctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct |
86 |
Q |
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|||||||||| |||| |||| |||| ||||| ||||||||||||||||||| |
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| T |
1260 |
ctcgtgtgtacgaaaatatggccaacagtctgtagagaaccaatgcaagct |
1210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 27757621 - 27757654
Alignment:
| Q |
29 |
aatgtgtctcgtgtgtatgaaagtatgaccaata |
62 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
27757621 |
aatgtgtctcgtgtgtatgaaaatatgaccaata |
27757654 |
T |
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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 40541 - 40589
Alignment:
| Q |
36 |
ctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaag |
84 |
Q |
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||||||||||||||| || | |||||||||| |||||||||||| |||| |
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| T |
40541 |
ctcgtgtgtatgaaaatacggccaatagtctgtagagaaccaattcaag |
40589 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 22216089 - 22216029
Alignment:
| Q |
149 |
aatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgattatgatga |
209 |
Q |
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|||||||| |||||||||||||||||||| || | |||||| | ||||||||| |||||| |
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| T |
22216089 |
aatatttggctcaaattctcaccggttatgctatatagaaaagagatggtgattgtgatga |
22216029 |
T |
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