View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_high_4 (Length: 450)
Name: NF17348_high_4
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 29899632 - 29900065
Alignment:
| Q |
9 |
ccaagaatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaatttcttgaaagttgcttttctagggtttact |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29899632 |
ccaacaatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaatttcttgaaagttgcttttctagggtttact |
29899731 |
T |
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| Q |
109 |
tgattgaatttatgttc--------atgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatga |
200 |
Q |
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| T |
29899732 |
tgattgaatttatgttcgtttggatatgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatga |
29899831 |
T |
|
| Q |
201 |
ctatgagactatctattggctattgttactggcttgacaatatcttttgttctaa-tgaatttagtattgtttttatattatcatcaatatcaactagaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29899832 |
ctatgagactatctattggctattgttactggcttgacaatatcttg-gttctaaatgaatttagtattgtttttatattatcatcaatatcaactagaa |
29899930 |
T |
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| Q |
300 |
gatagttaggaaattcaatagtttgaactacaatatagatcaatgtagttaggacatttagcttaaatttgattgctttactctttcataatgctagatt |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29899931 |
gatagttaggaaattcaatagcttgaactacaatatagatcaatgtagttaggacatttagcttaaatttgattgctttactctttcataatgctagatt |
29900030 |
T |
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| Q |
400 |
gttatataaaaacattgaaactacaggatcatatt |
434 |
Q |
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| T |
29900031 |
gttatataaaaacattgaaactacaggatcatatt |
29900065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 163 - 434
Target Start/End: Original strand, 29885547 - 29885818
Alignment:
| Q |
163 |
tttttatgattgcttatgttaattgtatttttgaatgactatgagactatctattggctattgttactggcttgacaatatcttttgttctaatgaattt |
262 |
Q |
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| T |
29885547 |
tttttatgattgcttaagttaattgtatttttgaatgactatgacactatctattggttattgttactgacttgataatctc-ttggttttaatgaattt |
29885645 |
T |
|
| Q |
263 |
agtattgtttttatattatcatcaatatcaactagaagatagttaggaaattcaatagtttgaactacaatatagatcaatgtagttaggacatttagct |
362 |
Q |
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| T |
29885646 |
attattgttttt-tattatcatctatatcaactataagtaagttaggaaattcaattgtttgagctac---atagatctatgtagttaggatatgtagca |
29885741 |
T |
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| Q |
363 |
taaatttgattgc-----tttactctttcataatgctagattgttatataaaaacattgaaactacaggatcatatt |
434 |
Q |
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| T |
29885742 |
taaatttgattgctccattgtactctttcataatgctaggttgttatataaaaaccttcaaactacatgatcatatt |
29885818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 29107217 - 29107317
Alignment:
| Q |
129 |
ttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatgactatgagactatctattggctattgtta |
228 |
Q |
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||||||| ||||||| | |||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||| |
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| T |
29107217 |
ttgtttttattataattgattgagtgattattcatttttatgactgcttaggttaattgtatttttggatgactatgagactatctatttgctattatta |
29107316 |
T |
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| Q |
229 |
c |
229 |
Q |
| |
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| |
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|
| T |
29107317 |
c |
29107317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 29453816 - 29453742
Alignment:
| Q |
126 |
atgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatga |
200 |
Q |
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|||||||||||||||||| |||||| | ||||| |||||||||||||||| || ||||||||||||||||| |
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| T |
29453816 |
atgttgttttcattataatcgattgagtaaatattcgtttttatgattgcttagattgattgtatttttgaatga |
29453742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 29453906 - 29453865
Alignment:
| Q |
48 |
ccatggattacactgaaagcttagtttcaatttcttgaaagt |
89 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
29453906 |
ccatggactacactgaaagcttagtttcaattttatgaaagt |
29453865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 29107080 - 29107144
Alignment:
| Q |
14 |
aatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaat |
78 |
Q |
| |
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||||||||||||||||| | | || || |||||| ||||||||| |||||||||||||||||| |
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| T |
29107080 |
aatataactagagaagatgcacgcttgtgttgggctatggattacgttgaaagcttagtttcaat |
29107144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 29430679 - 29430603
Alignment:
| Q |
128 |
gttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatgactat |
204 |
Q |
| |
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|||||||||||||||| |||||| || ||||| |||| |||||||||| || |||||| |||||||||||||| |
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| T |
29430679 |
gttgttttcattataatcgattgagtgaatattcgattttctgattgcttagattgattgtaattttgaatgactat |
29430603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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