View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17348_low_10 (Length: 389)

Name: NF17348_low_10
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17348_low_10
NF17348_low_10
[»] chr3 (5 HSPs)
chr3 (18-372)||(14338140-14338498)
chr3 (328-376)||(20503505-20503553)
chr3 (335-376)||(26492183-26492224)
chr3 (335-376)||(55401115-55401156)
chr3 (328-368)||(40993306-40993346)
[»] chr2 (6 HSPs)
chr2 (328-376)||(18840984-18841032)
chr2 (328-376)||(2438690-2438738)
chr2 (325-376)||(28596509-28596560)
chr2 (329-376)||(30404822-30404869)
chr2 (328-376)||(15972913-15972961)
chr2 (328-376)||(21091763-21091811)
[»] chr8 (6 HSPs)
chr8 (328-376)||(31557036-31557084)
chr8 (86-145)||(29705884-29705943)
chr8 (328-373)||(5813635-5813680)
chr8 (328-368)||(33405355-33405395)
chr8 (328-368)||(44462166-44462206)
chr8 (328-368)||(44469699-44469739)
[»] chr7 (6 HSPs)
chr7 (328-376)||(21880192-21880240)
chr7 (342-377)||(33994251-33994286)
chr7 (328-370)||(598254-598296)
chr7 (326-376)||(7197266-7197316)
chr7 (328-376)||(21864848-21864896)
chr7 (336-372)||(25956489-25956525)
[»] chr6 (9 HSPs)
chr6 (328-376)||(32978870-32978918)
chr6 (336-376)||(4877983-4878023)
chr6 (328-376)||(34595174-34595222)
chr6 (335-374)||(24645523-24645562)
chr6 (329-376)||(28152138-28152185)
chr6 (204-266)||(28077215-28077277)
chr6 (328-376)||(16833348-16833396)
chr6 (336-368)||(18367895-18367927)
chr6 (328-376)||(28715335-28715383)
[»] chr1 (8 HSPs)
chr1 (328-376)||(1815297-1815345)
chr1 (328-376)||(40258904-40258952)
chr1 (335-376)||(22515865-22515906)
chr1 (343-376)||(38078647-38078680)
chr1 (335-376)||(46348361-46348402)
chr1 (328-376)||(18190079-18190127)
chr1 (336-376)||(21530729-21530769)
chr1 (204-264)||(33152696-33152756)
[»] chr4 (10 HSPs)
chr4 (335-377)||(4157188-4157230)
chr4 (335-377)||(4157475-4157517)
chr4 (328-376)||(23292957-23293005)
chr4 (328-376)||(29205484-29205532)
chr4 (329-376)||(12797310-12797357)
chr4 (90-160)||(21570830-21570900)
chr4 (335-376)||(21945543-21945584)
chr4 (335-376)||(34306782-34306823)
chr4 (336-376)||(16073434-16073474)
chr4 (328-368)||(30982838-30982878)
[»] chr5 (3 HSPs)
chr5 (328-376)||(42893400-42893448)
chr5 (216-266)||(22976404-22976454)
chr5 (216-262)||(33695359-33695405)
[»] scaffold0083 (1 HSPs)
scaffold0083 (335-376)||(45508-45549)
[»] scaffold0053 (1 HSPs)
scaffold0053 (335-376)||(8838-8879)
[»] scaffold0697 (1 HSPs)
scaffold0697 (336-376)||(1684-1724)
[»] scaffold0652 (1 HSPs)
scaffold0652 (328-376)||(433-481)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 14338140 - 14338498
Alignment:
Q  18 gaaagatattgttagaaagatttaattcatacatacggcaaatgtgaagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14338140 gaaagatattgttagaaagatttaattcatacatacggcaaatgtaaagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttg 14338239  T
Q  118 aattctatcattaccacttctgaagtcagacacatgattggttatgctatataatttacttatttaatgctttgagaattgattttggctctgttagata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||    
T  14338240 aattctatcattaccacttctgaagtcagacacatgattggttatgctatataatttacttatttaatgctttgagaattgattttggttctgtttggta 14338339  T
Q  218 aatatagtggatagttgataagctaccttatagtttatagcggatagctaataagctagctgatggccttaccaaacagagcccttaa----ttgttgaa 313  Q
    ||||||| ||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||    
T  14338340 aatatagcggataattgataagctacctgatagcttatagcggatagctgataagctagctgatggccttaccaaacagagcccttaactgtttgttgaa 14338439  T
Q  314 gcaaaacttttggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgt 372  Q
    | |||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||    
T  14338440 ggaaaacttttggagtgtcccggtgtccgatacgtgtcgtgtctgacaccgacatttgt 14338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 20503553 - 20503505
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||    
T  20503553 gtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaatt 20503505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 26492183 - 26492224
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| ||||||||||||||| |||||||| ||||||||||    
T  26492183 ggtgtcagacatgtgtcgtgtccgacaccgatacttgtaatt 26492224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 55401156 - 55401115
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  55401156 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 55401115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 40993306 - 40993346
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 368  Q
    |||||| |||||| ||||||||||||||| |||||||||||    
T  40993306 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacac 40993346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 18840984 - 18841032
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  18840984 gtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaatt 18841032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 2438690 - 2438738
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  2438690 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 2438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 28596560 - 28596509
Alignment:
Q  325 ggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||||||| ||||| |||| |||||||||| ||||||||||||| |||||    
T  28596560 ggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataatt 28596509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 30404822 - 30404869
Alignment:
Q  329 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||||    
T  30404822 tgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaatt 30404869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 15972961 - 15972913
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| || ||| |||| |||||||||| |||||||||||||||||||    
T  15972961 gtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 15972913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 21091811 - 21091763
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| ||||||||||| ||| | |||||||||| |||||||||||||    
T  21091811 gtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaatt 21091763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 31557084 - 31557036
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||||||||||||||||||||||| ||||||||||    
T  31557084 gtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaatt 31557036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 29705884 - 29705943
Alignment:
Q  86 aattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtca 145  Q
    |||||||||||| |||| ||||||||||||||| || |||||| ||||||||| ||||||    
T  29705884 aattataaccgttaaatcattataaacgtttgacttttatcataaccacttctaaagtca 29705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 5813680 - 5813635
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgta 373  Q
    |||||| |||||| |||| |||||||||| ||||||||||||||||    
T  5813680 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgta 5813635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 33405355 - 33405395
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 368  Q
    |||||| |||||| ||||||||||||||| |||||||||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacac 33405395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 44462166 - 44462206
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 368  Q
    |||||| |||||| ||||||| |||||||||||||||||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacac 44462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 44469699 - 44469739
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 368  Q
    |||||| |||||| ||||||| |||||||||||||||||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacac 44469739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 21880240 - 21880192
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  21880240 gtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 21880192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 377
Target Start/End: Complemental strand, 33994286 - 33994251
Alignment:
Q  342 gacatgtgtcgtgtctgacaccgacacttgtaattg 377  Q
    ||||||||||||||||||||||||||||||||||||    
T  33994286 gacatgtgtcgtgtctgacaccgacacttgtaattg 33994251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 598296 - 598254
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacactt 370  Q
    |||||| |||||| |||| ||||||||||||||||||||||||    
T  598296 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacactt 598254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 7197266 - 7197316
Alignment:
Q  326 gagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||    
T  7197266 gagtatcccggtgtcggacatgtgttgtgtccgacaccgacacttgtaatt 7197316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 21864896 - 21864848
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| |||||||||| |||| ||||||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaatt 21864848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 25956525 - 25956489
Alignment:
Q  336 gtgtccgacatgtgtcgtgtctgacaccgacacttgt 372  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  25956525 gtgtccgacatgtatcgtgtccgacaccgacacttgt 25956489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 32978870 - 32978918
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  32978870 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 32978918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 4878023 - 4877983
Alignment:
Q  336 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  4878023 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4877983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 34595222 - 34595174
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||    
T  34595222 gtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaatt 34595174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 24645562 - 24645523
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaa 374  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  24645562 ggtgtcggacacgtgtcgtgtctgacaccgacacttgtaa 24645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 28152185 - 28152138
Alignment:
Q  329 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| |||||| |||| |||||||||| |||||||||||||||||||    
T  28152185 tgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 28152138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 28077277 - 28077215
Alignment:
Q  204 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagct 266  Q
    ||||||||| | |||| |||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  28077277 ggctctgtttggtaaaaatagcggatagtttataagctacctgatagcttatagctgatagct 28077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 16833396 - 16833348
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||  ||||||||||| ||||||||||||||||||    
T  16833396 gtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaatt 16833348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 18367927 - 18367895
Alignment:
Q  336 gtgtccgacatgtgtcgtgtctgacaccgacac 368  Q
    ||||| |||||||||||||||||||||||||||    
T  18367927 gtgtcagacatgtgtcgtgtctgacaccgacac 18367895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 28715383 - 28715335
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||    
T  28715383 gtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaatt 28715335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 1815345 - 1815297
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  1815345 gtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaatt 1815297  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 40258904 - 40258952
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  40258904 gtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaatt 40258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 22515865 - 22515906
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| || |||||||||||| |||||||||||||||||||    
T  22515865 ggtgtcggatatgtgtcgtgtccgacaccgacacttgtaatt 22515906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 38078647 - 38078680
Alignment:
Q  343 acatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||||||||||| |||||||||||||||||||    
T  38078647 acatgtgtcgtgtccgacaccgacacttgtaatt 38078680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 46348361 - 46348402
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  46348361 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 46348402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 18190079 - 18190127
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| |||| |||||||||| ||||||||||||||    
T  18190079 gtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaatt 18190127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 21530769 - 21530729
Alignment:
Q  336 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| ||||||||||||||| ||||||||||||| |||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataatt 21530729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 33152756 - 33152696
Alignment:
Q  204 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatag 264  Q
    |||||| || |||||| |||| |||||| |||||||||| || |||||||||||| |||||    
T  33152756 ggctctatttgataaaaatagcggatagctgataagctagctgatagtttatagctgatag 33152696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 4157230 - 4157188
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattg 377  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  4157230 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattg 4157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 4157517 - 4157475
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaattg 377  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  4157517 ggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattg 4157475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 23292957 - 23293005
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| |||||||||| |||||||||||||||||||    
T  23292957 gtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 23293005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 29205532 - 29205484
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||||||||||||||  ||||||||||||||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaatt 29205484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 12797310 - 12797357
Alignment:
Q  329 tgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  12797310 tgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaatt 12797357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 21570830 - 21570900
Alignment:
Q  90 ataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggtt 160  Q
    |||||||||| || |||| ||| |||||| || |||||| || |||||| |||||| ||||||||||||||    
T  21570830 ataaccgtcacataattagaaatgtttgacttttatcatgacgacttctaaagtcacacacatgattggtt 21570900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 21945584 - 21945543
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||||||| |||| |||||||||||||||||||    
T  21945584 ggtgtcggacatgtgtcatgtccgacaccgacacttgtaatt 21945543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 34306782 - 34306823
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  34306782 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 34306823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 16073474 - 16073434
Alignment:
Q  336 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| ||||||| ||||||| |||||||||||||||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaatt 16073434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 30982838 - 30982878
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 368  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  30982838 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 42893448 - 42893400
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| |||| |||||||||||||||||||||||||    
T  42893448 gtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaatt 42893400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 22976404 - 22976454
Alignment:
Q  216 taaatatagtggatagttgataagctaccttatagtttatagcggatagct 266  Q
    |||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  22976404 taaaaatagcggatagctgataagctagcttatagtttatagctgatagct 22976454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 33695405 - 33695359
Alignment:
Q  216 taaatatagtggatagttgataagctaccttatagtttatagcggat 262  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  33695405 taaaaatagcggatagttgataagctagctgatagtttatagcggat 33695359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 45508 - 45549
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  45508 ggtgtcagacacgtgtcgtgtccgacaccgacacttgtaatt 45549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 8879 - 8838
Alignment:
Q  335 ggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  8879 ggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatt 8838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 1724 - 1684
Alignment:
Q  336 gtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    ||||| ||||||||||||||| ||||||||||||| |||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataatt 1684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 433 - 481
Alignment:
Q  328 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacacttgtaatt 376  Q
    |||||| |||||| |||| | |||||||| |||||||||||||||||||    
T  433 gtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaatt 481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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