View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17348_low_11 (Length: 374)

Name: NF17348_low_11
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17348_low_11
NF17348_low_11
[»] chr5 (6 HSPs)
chr5 (215-357)||(36320469-36320607)
chr5 (18-137)||(36320708-36320829)
chr5 (312-362)||(36326864-36326914)
chr5 (283-327)||(36326929-36326973)
chr5 (261-309)||(36304639-36304687)
chr5 (324-361)||(36328000-36328036)
[»] chr8 (1 HSPs)
chr8 (139-260)||(1890744-1890860)
[»] chr6 (2 HSPs)
chr6 (142-259)||(32133885-32133997)
chr6 (142-190)||(22693775-22693823)
[»] chr2 (1 HSPs)
chr2 (167-260)||(32691872-32691960)
[»] chr4 (1 HSPs)
chr4 (212-261)||(56557663-56557712)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 215 - 357
Target Start/End: Complemental strand, 36320607 - 36320469
Alignment:
Q  215 aatgttttttaataaaacctcaagggaggtaagtgcaatttgctctatattttaatttatatatatccaattaatggcatgatattaatgtaatggcatc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||| |||||||||||||||||||||||||||||    
T  36320607 aatgttttttaataaaacctcaagggaggtaagtgcaatttgctctatatgttaatttatat----ccaagtaatggcatgatattaatgtaatggcatc 36320512  T
Q  315 tgaatgcagtgttgtaacaaggatgaaaaccaagttgtgttat 357  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36320511 tgaatgcagtgttgtaacaaggatgaaaaccaagttgtgttat 36320469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 36320829 - 36320708
Alignment:
Q  18 taaatggttgtgtttattgaactggtgtgcaagagaatttctaaaaaccgtggatgaagatgaagggaaagattttggtaagcag--taagcaccgtgcg 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||      
T  36320829 taaatggttgtgtttattgaactggtgtgctagagaatttctaaaaactgtggatgaagatgaagggaaagattttggtaagcagtataagcaccgtgaa 36320730  T
Q  116 aagagacggaaaagttagtggg 137  Q
    ||||||||||||||||||||||    
T  36320729 aagagacggaaaagttagtggg 36320708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 36326914 - 36326864
Alignment:
Q  312 atctgaatgcagtgttgtaacaaggatgaaaaccaagttgtgttatctctg 362  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  36326914 atctgactgcagtgttgtaacaaggttgaaaaccaagttgtgttatctctg 36326864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 36326973 - 36326929
Alignment:
Q  283 aattaatggcatgatattaatgtaatggcatctgaatgcagtgtt 327  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  36326973 aattaatggcatgatattaatgtaatggcatctgactgcagtgtt 36326929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 36304687 - 36304639
Alignment:
Q  261 atattttaatttatatatatccaattaatggcatgatattaatgtaatg 309  Q
    |||||||||||||||| ||   |||||||||||||||||||||||||||    
T  36304687 atattttaatttatatctaagtaattaatggcatgatattaatgtaatg 36304639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 36328036 - 36328000
Alignment:
Q  324 tgttgtaacaaggatgaaaaccaagttgtgttatctct 361  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  36328036 tgttgtaacaaggatgaaaaccaagttgt-ttatctct 36328000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 1890860 - 1890744
Alignment:
Q  139 aaaggggaaagtgcctcacttatgaaaaaattaagggaggtcaatattttttccaaactagagggggtgtggcgtgaatgttttttaataaaacctcaag 238  Q
    |||| ||||||| ||||| | || ||| |||||||||| || ||| |||||  |||||||||| |||||||     | ||| |||||||||||||| |||    
T  1890860 aaagaggaaagtacctcaatcataaaataattaagggatgttaatgtttttctcaaactagagagggtgtg-----agtgtcttttaataaaacctgaag 1890766  T
Q  239 ggaggtaagtgcaatttgctct 260  Q
    |||||| |||||||||||||||    
T  1890765 ggaggtgagtgcaatttgctct 1890744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 259
Target Start/End: Original strand, 32133885 - 32133997
Alignment:
Q  142 ggggaaagtgcctcacttatgaaaaaattaagggaggtcaatattttttccaaactagagggggtgtggcgtgaatgttttttaataaaacctcaaggga 241  Q
    |||||||||||| || | |||| | ||||||||||||| ||| ||||||| |||||||||||     |  |||||||| |||||||||||| ||| ||||    
T  32133885 ggggaaagtgccacaatcatgatataattaagggaggttaatgttttttctaaactagaggg-----gaagtgaatgtcttttaataaaacttcagggga 32133979  T
Q  242 ggtaagtgcaatttgctc 259  Q
    ||| ||| ||||||||||    
T  32133980 ggtgagtacaatttgctc 32133997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 22693823 - 22693775
Alignment:
Q  142 ggggaaagtgcctcacttatgaaaaaattaagggaggtcaatatttttt 190  Q
    ||||||||||||||||| |||||  ||||||||||||| ||| ||||||    
T  22693823 ggggaaagtgcctcactcatgaagtaattaagggaggtgaatgtttttt 22693775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 32691872 - 32691960
Alignment:
Q  167 aattaagggaggtcaatattttttccaaactagagggggtgtggcgtgaatgttttttaataaaacctcaagggaggtaagtgcaatttgctct 260  Q
    ||||||||||||| ||| ||||||||||| || |||||||     ||||||||||||||||||||  | | ||||| | |||||||||||||||    
T  32691872 aattaagggaggtgaatgttttttccaaattaaagggggt-----gtgaatgttttttaataaaattttaggggagctgagtgcaatttgctct 32691960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 56557712 - 56557663
Alignment:
Q  212 gtgaatgttttttaataaaacctcaagggaggtaagtgcaatttgctcta 261  Q
    |||||||| |||||| ||||||| | ||||||| ||||||||||||||||    
T  56557712 gtgaatgtcttttaaaaaaaccttaggggaggtgagtgcaatttgctcta 56557663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University