View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_low_12 (Length: 323)
Name: NF17348_low_12
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 1327344 - 1327664
Alignment:
| Q |
1 |
tcaaattgtgattgcatatatgtaattgatgttcacatattaattgttatattatttttactgatacatttcttgtttaaatgtcatgtaat-------- |
92 |
Q |
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| T |
1327344 |
tcaaattgtgattacatatatgtaattgatgttcacatattaattctgatcttatttttactgatacatttcttgtttaaatgtcatgtaatttaaaaga |
1327443 |
T |
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| Q |
93 |
-------------ataaaatattctaccnnnnnnntcaatatattagcattgatccataattagaataggaacccattgaaaaagtcaaagggtgaatat |
179 |
Q |
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| T |
1327444 |
ttatacacagtatataaaatattctaccaaaaaaatcaatatattagcattgatccataattagaataggaacccattgaaaaagtcaaagggtgaatat |
1327543 |
T |
|
| Q |
180 |
agcaaagccaagaatgtcataattaattagagtcaaatactttctaaagggtaatacatgtatcactacatctcctttaatttggttcccttgttttcat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1327544 |
agcaaagccaagaatgtcataattaattagagtcaaatactttctaaagggtaatacatgtatcactacatctcc-----tttggttcccttgttttcat |
1327638 |
T |
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| Q |
280 |
gctacaaaaacggaccatgcttaact |
305 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
1327639 |
gctacaaaaacggaccatgcttaact |
1327664 |
T |
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