View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_low_13 (Length: 291)
Name: NF17348_low_13
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 10065930 - 10066233
Alignment:
| Q |
1 |
ccaaacaagacaaacatttacattgtttctctatcatacac-------------ttgtgcacaacgatattcaaagtgctattgttattaacatatatat |
87 |
Q |
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| T |
10065930 |
ccaaacaagacaaacatttacattgtttctctatcatacactatatcatcacacttgtgcacaacgatattcaaagtgctattgtaattaacatatatat |
10066029 |
T |
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| Q |
88 |
gcatataattaatacttataatgttttacagtatcttgataaattaatttgctcttctacaattgtaacgaacttcaccttgtttcccagtaagtggctt |
187 |
Q |
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| T |
10066030 |
gcatataattaatacttataatgttttacagtatcttgataaattaattggctctcctacaattgtaacgaacttcaccctgtttcccagtaagtggctt |
10066129 |
T |
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| Q |
188 |
aatatttcccatcttaatcatagattttgcaaagtccttatagaaagttcttgtatcacgcctatattttctaaccaaagctccagtataaccacccttc |
287 |
Q |
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| T |
10066130 |
aatatttcccatcttaatcatagattttgcaaagtccttatagaaagttcttgtatcacgcctatattttctaaccaaagctccagtataaccacccttc |
10066229 |
T |
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| Q |
288 |
aaca |
291 |
Q |
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|||| |
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| T |
10066230 |
aaca |
10066233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 10060154 - 10060402
Alignment:
| Q |
38 |
acacttgtgcacaacgatattcaaagtgctattgttattaacatatatatgcatataattaatacttataatgttttacagtatcttgataaattaattt |
137 |
Q |
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| T |
10060154 |
acacttgtgaacaaccaaattcaa-gtgctcctcttattaacttatatatgcaga--actaatacatataatgcttaacaatatcttgatgaattaattg |
10060250 |
T |
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| Q |
138 |
gctcttctacaattgtaacgaacttcaccttgtttcccagtaagtggcttaatatttcccatcttaatcatagattttgcaaagtccttatagaaagttc |
237 |
Q |
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| T |
10060251 |
gctctcctgcaatttgaacgaatttcaccttgactcccagtaagtggcttaatatttcccatcttaatcatagatttcgcaaagtcgttgtagaaagcac |
10060350 |
T |
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| Q |
238 |
ttgtatcacgcctatattttctaaccaaagctccagtataaccacccttcaa |
289 |
Q |
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| T |
10060351 |
ttgtatcgcgcctatactttctaaccaacgatccagtataatcaccattcaa |
10060402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 31753003 - 31753044
Alignment:
| Q |
170 |
tttcccagtaagtggcttaatatttcccatcttaatcataga |
211 |
Q |
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| T |
31753003 |
tttcccagtaagtggctttatgttacccatcttaatcataga |
31753044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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