View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_low_3 (Length: 462)
Name: NF17348_low_3
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 24554930 - 24555360
Alignment:
| Q |
16 |
taatgctgtaactgatttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaag |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
24554930 |
taatgctgtaactggtttaccagttaaattcaccatactagaaaacagcactagtaacatcgttaccggtaccgatcttgagatcgagttcattaacaag |
24555029 |
T |
|
| Q |
116 |
cctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtag |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555030 |
ccagattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtag |
24555129 |
T |
|
| Q |
216 |
aattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555130 |
aattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttgg |
24555229 |
T |
|
| Q |
316 |
attacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttgatgctgcttctattaaatct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555230 |
attacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaattaatgcttattctgttgtatttgttgatgctgcttctattaaatct |
24555329 |
T |
|
| Q |
416 |
ggaaatagtgcaaatagtacattacctattt |
446 |
Q |
| |
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| T |
24555330 |
ggaaatagtgcaaatagtgcattacctattt |
24555360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 31 - 400
Target Start/End: Original strand, 2916966 - 2917335
Alignment:
| Q |
31 |
tttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaa |
130 |
Q |
| |
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||||||||||||||||||| | | ||||||| ||| |||||||| | || ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
2916966 |
tttaccagttaaattcaccgtcccagaaaacaacaccggtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaa |
2917065 |
T |
|
| Q |
131 |
tcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaa |
230 |
Q |
| |
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|| || |||||||||||| || |||||||| | ||||||||||| |||||||||||||||| | ||||||||| |||| ||||| ||| ||||| | |
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| T |
2917066 |
tcatcaaaatggttgatgtttcttgatcataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggca |
2917165 |
T |
|
| Q |
231 |
aatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaa |
330 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| | ||| ||| || |
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| T |
2917166 |
aattcttaatagtgaaacatggatctggtcatgtttataggcttggattttgtttggatgtaactggtgattgtggttatattggacttcaaatgttcaa |
2917265 |
T |
|
| Q |
331 |
ttctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttgatgct |
400 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2917266 |
ttctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgct |
2917335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 31 - 396
Target Start/End: Original strand, 2930554 - 2930919
Alignment:
| Q |
31 |
tttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaa |
130 |
Q |
| |
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||||||||||||||||||||| | |||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
2930554 |
tttaccagttaaattcaccatcccagaaaacagcactggtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaa |
2930653 |
T |
|
| Q |
131 |
tcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaa |
230 |
Q |
| |
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| || |||||||||||| ||||||||||| | ||||||||||| |||||||||||||||| | ||||||||| |||| ||||| ||| ||||| | |
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|
| T |
2930654 |
gcatcaaaatggttgatgtttgttgatcataatactcaactaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggca |
2930753 |
T |
|
| Q |
231 |
aatttttaattttgaaacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaa |
330 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| ||| || |||||| ||| ||||| | ||| ||| || |
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| T |
2930754 |
aattcttaatagtgaaacatggatctggtcatgtttataggcttggattttgtttggatgtaactggaaattgtggctatattggacttcaaatgttcaa |
2930853 |
T |
|
| Q |
331 |
ttctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttga |
396 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
2930854 |
ttctgaagaaggtggatcacgtttgtttttgactgcaattgatgtttattctgttctatttgttga |
2930919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 31 - 416
Target Start/End: Original strand, 24566648 - 24567039
Alignment:
| Q |
31 |
tttaccagttaaattcaccatacttgaaaacagcactagtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaa |
130 |
Q |
| |
|
||||||||||||||||| ||| | ||||| ||||||||||||||| | | ||||| ||||||||||| |||||||||| |||||||||||| ||| || |
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|
| T |
24566648 |
tttaccagttaaattcagcatgttagaaaatagcactagtaatatcttgccaggtactgatcttgagattgagttcactacgaagcctgattgcgctaaa |
24566747 |
T |
|
| Q |
131 |
tcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaa |
230 |
Q |
| |
|
|| || ||||||| |||| |||||||||||| || ||||||||||||||| |||||||||||| |||| ||| |||||||||||||| || ||||||| |
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|
| T |
24566748 |
tcgtcgaaatggtcgatgtttgttgatcatgacactcaactaagttttgtcggtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaa |
24566847 |
T |
|
| Q |
231 |
aatttttaattttga------aacatggatctggtaatgcttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaaga |
324 |
Q |
| |
|
|||||||| | ||| |||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||| || | ||| ||| || |
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|
| T |
24566848 |
aatttttagtagtgaaacatcaacatggatctggtcatgcttataggattggattttgtttggatacaactggagattgtggttttattgcattggaatt |
24566947 |
T |
|
| Q |
325 |
gtttaattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttgatgctgcttctattaaatctg |
416 |
Q |
| |
|
|| ||||| | || |||||| ||||||||||||| |||| | |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
24566948 |
tttcaattccgaagatggtggaccacgtttgatttttactgtgaatgatgcttattctgttgtttttgttgatgctgcttctattaaatctg |
24567039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 20475777 - 20475895
Alignment:
| Q |
93 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtgg |
192 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| | |||||| || ||||||||||| |||||||| ||| | |||| | || ||||||||||||||| |
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|
| T |
20475777 |
ttgatatcgagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgatagtgttattcaaaaagcttgtgttggtattggtgg |
20475876 |
T |
|
| Q |
193 |
tcctgcaaactatcctggt |
211 |
Q |
| |
|
||||| ||| ||||||||| |
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|
| T |
20475877 |
tcctgaaaattatcctggt |
20475895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 20505583 - 20505699
Alignment:
| Q |
95 |
gagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtggtc |
194 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||| || ||||||||||| || ||||| |||| | | | || || ||||||||||||||||| |
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|
| T |
20505583 |
gagattgagttcacaaagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaatatattttgtgttggtattggtggtc |
20505682 |
T |
|
| Q |
195 |
ctgcaaactatcctggt |
211 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
20505683 |
gagaaaactatcctggt |
20505699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 20517691 - 20517723
Alignment:
| Q |
176 |
tttgttggtattggtggtcctgcaaactatcct |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
20517691 |
tttgttggtattggtggtcctgaaaactatcct |
20517723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 13072369 - 13072251
Alignment:
| Q |
93 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcaatcaactaagttttgttggtattggtgg |
192 |
Q |
| |
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|||| ||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||||| |||| | |||| | || ||||||||||||||| |
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|
| T |
13072369 |
ttgatatcgagttcgttaggaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtgg |
13072270 |
T |
|
| Q |
193 |
tcctgcaaactatcctggt |
211 |
Q |
| |
|
||| | ||||||||||||| |
|
|
| T |
13072269 |
tccagaaaactatcctggt |
13072251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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