View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17348_low_5 (Length: 434)

Name: NF17348_low_5
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17348_low_5
NF17348_low_5
[»] chr1 (10 HSPs)
chr1 (16-369)||(25483714-25484067)
chr1 (16-334)||(25859933-25860251)
chr1 (304-424)||(25884213-25884337)
chr1 (314-424)||(25603395-25603505)
chr1 (314-424)||(25483538-25483646)
chr1 (333-424)||(25860406-25860496)
chr1 (314-357)||(25604229-25604272)
chr1 (314-357)||(25886326-25886369)
chr1 (113-150)||(25604126-25604163)
chr1 (113-150)||(25886231-25886268)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 25484067 - 25483714
Alignment:
Q  16 gaattttcattcaggtattttctctatcattctttatttgctcaaggtgattttagtccttttcaaatcttgttcataccatattcaaatcttctttggg 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25484067 gaattttcattcaggtattttctctatcattctttctttgctcaaggtgattttagtccttttcaaatcttgttcataccatattcaaatcttcttgggg 25483968  T
Q  116 gattagggtttaaaaccgttaattagggcttttttaaggtgagagattgactgttttttcatgaaataaaaccgtcaatcacattgagtattattattaa 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25483967 gattagggtttaaaaccgtttattagggcttttttaaggtgagagattgactgttttttcatgaaatcaaaccgtcaatcacattgagtattattattaa 25483868  T
Q  216 catcattaaatcgataatttgttggttttattttactatttttgttctttcataattctcggttgtggtctctgttagaatttcggttgattcataattc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483867 catcattaaatcgataatttgttggttttattttactatttttgttctttcataattctcggttgtggtctctgttagaatttcggttgattcataattc 25483768  T
Q  316 tctcgcccttgatcaatatgttatgtgaatccgtgcttattagggtttaaaacc 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25483767 tctcgcccttgatcaatatgttatgtgaatccgtgcttattagggtttaaaacc 25483714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 25859933 - 25860251
Alignment:
Q  16 gaattttcattcaggtattttctctatcattctttatttgctcaaggtgattttagtccttttcaaatcttgttcataccatattcaaatcttctttggg 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25859933 gaattttcattcaggtattttctctatcattctttctttgctcaaggtgattttagtccttttcaaatcttgttcataccatattcaaatcttcttgggg 25860032  T
Q  116 gattagggtttaaaaccgttaattagggcttttttaaggtgagagattgactgttttttcatgaaataaaaccgtcaatcacattgagtattattattaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25860033 gattagggtttaaaaccgttaattagggcttttttaaggtgagagattgactgttttttcatgaaatcaaaccgtcaatcacattgagtattattattaa 25860132  T
Q  216 catcattaaatcgataatttgttggttttattttactatttttgttctttcataattctcggttgtggtctctgttagaatttcggttgattcataattc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  25860133 catcattaaatcgataatttgttggttttattttactatttttgttctttcataaatctcggttgtggtctctgttagaatttcggttgattcatagttc 25860232  T
Q  316 tctcgcccttgatcaatat 334  Q
    |||| ||||||||||||||    
T  25860233 tctcacccttgatcaatat 25860251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 304 - 424
Target Start/End: Original strand, 25884213 - 25884337
Alignment:
Q  304 gattcataattctctc----gcccttgatcaatatgttatgtgaatccgtgcttattagggtttaaaaccattgatttgaatttgacactgtgttttcat 399  Q
    ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25884213 gattcataattctctctcttgcccttgatcaatatgttatgtgaatccgtgcttattagggtttaaaaccattgatttgaatttgacactgtgttttcat 25884312  T
Q  400 ataattaattatcttgctgcctttg 424  Q
    |||||||||||||||||||||||||    
T  25884313 ataattaattatcttgctgcctttg 25884337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 314 - 424
Target Start/End: Original strand, 25603395 - 25603505
Alignment:
Q  314 tctctcgcccttgatcaatatgttatgtgaatccgtgcttattagggtttaaaaccattgatttgaatttgacactgtgttttcatataattaattatct 413  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25603395 tctctcgcccttgatcaatatgttatgtgaatccatgcttattagggtttaaaacctttgatttgaatttgacactgtgttttcatataattaattatct 25603494  T
Q  414 tgctgcctttg 424  Q
    |||||||||||    
T  25603495 tgctgcctttg 25603505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 314 - 424
Target Start/End: Complemental strand, 25483646 - 25483538
Alignment:
Q  314 tctctcgcccttgatcaatatgttatgtgaatccgtgcttattagggtttaaaaccattgatttgaatttgacactgtgttttcatataattaattatct 413  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||  |||||||||||||||||||||||    
T  25483646 tctctcgcccttgatcaatatgttatgtgaatccatgcttattagggtttaaaacctttgatttgaatttcacac--tgttttcatataattaattatct 25483549  T
Q  414 tgctgcctttg 424  Q
    |||||||||||    
T  25483548 tgctgcctttg 25483538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 333 - 424
Target Start/End: Original strand, 25860406 - 25860496
Alignment:
Q  333 atgttatgtgaatccgtgcttattagggtttaaaaccattgatttgaatttgacactgtgttttcatataattaattatcttgctgcctttg 424  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  25860406 atgttatgtgaatccgtgcttattagggtttaaaacctttgatttgaatttcacactgt-ttttcgtataattaattatcttgctgcctttg 25860496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 25604229 - 25604272
Alignment:
Q  314 tctctcgcccttgatcaatatgttatgtgaatccgtgcttatta 357  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  25604229 tctctcacccttcatcaatatgttatgtgaatccgtgcttatta 25604272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 25886326 - 25886369
Alignment:
Q  314 tctctcgcccttgatcaatatgttatgtgaatccgtgcttatta 357  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  25886326 tctctcacccttcatcaatatgttatgtgaatccgtgcttatta 25886369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 25604126 - 25604163
Alignment:
Q  113 ggggattagggtttaaaaccgttaattagggctttttt 150  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  25604126 ggggattagggtttaaaacctttaattggggctttttt 25604163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 25886231 - 25886268
Alignment:
Q  113 ggggattagggtttaaaaccgttaattagggctttttt 150  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  25886231 ggggattagggtttaaaacctttaattggggctttttt 25886268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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