View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_low_6 (Length: 433)
Name: NF17348_low_6
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 131 - 428
Target Start/End: Original strand, 35971867 - 35972164
Alignment:
| Q |
131 |
atgaaattaataagccaatcactaaaatttgtgatttcagcattgtgaaaatttattccaaggtttgacccaaaccactctcgctcgctgggttatatca |
230 |
Q |
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| T |
35971867 |
atgaaattaataagccaatcactaaaatttgtgatttcagcattgtgaaaatttattccaaggtttgacccaaaccactctcgctcgctgggttatatca |
35971966 |
T |
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| Q |
231 |
catcacatttgagaaaaaggtggtttatggtttcagtaccagactcacatctggggcaggggagggaataccttatgcctcttttgtggagttcatcccg |
330 |
Q |
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| T |
35971967 |
catcacatttgagaaaaaggtggtttatggtttcaataccagactcacatctggggcagaggagggaataccttatgcctcttttgtggagttcatcccg |
35972066 |
T |
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| Q |
331 |
gactggtaaagctttctgcaaaaatattagcatacaaattaaaatgatgaactaataaataatcattatagagttttaactgaataccaatcattcat |
428 |
Q |
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| T |
35972067 |
gactggtaaagctttctgcaacaatattagcatacaaattaaaatgatgaactaataattaatcattatagagttttaactgaataccaatcattcat |
35972164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 35971654 - 35971764
Alignment:
| Q |
5 |
gagattgggctggcggattgatggagtcaagggagtctggagctgcaatttgagctgatctatagttaaggatgctagaatctgcacgctgaatcacgat |
104 |
Q |
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| T |
35971654 |
gagattgggctggcggattgatggagtcaagggagcctggagctgcaatttgagctgatctatagttaaggatgctagaatctgcgcgctgaatcacgat |
35971753 |
T |
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| Q |
105 |
ctcaccaggta |
115 |
Q |
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| T |
35971754 |
ctcaccaggta |
35971764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 21992479 - 21992534
Alignment:
| Q |
63 |
tctatagttaaggatgctagaatctgcacgctgaatcacgatctcaccaggtacgt |
118 |
Q |
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| T |
21992479 |
tctatagttgaagatgctagagtcagcacgttgaatcacaatctcaccaggtacgt |
21992534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 16850339 - 16850283
Alignment:
| Q |
272 |
gactcacatctggggcaggggagggaataccttatgcctcttttgtggagttcatcc |
328 |
Q |
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| T |
16850339 |
gactcacatctgggacagagcagagaacacctaatgcctcgtttgtggagttcatcc |
16850283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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