View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17348_low_8 (Length: 389)
Name: NF17348_low_8
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 9629429 - 9629800
Alignment:
| Q |
15 |
ttcactgattcttgatcttgtctctagatggtaataacctatcttaataaaatgtttgctggatttgttgagcaagttcttcagcactgagttggcattc |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9629429 |
ttcattgattcttgatcttgtctctagatggtaataacctttcttaataaaatgtttgctggatttgttgagcaagttcttcagcactgagttggcattc |
9629528 |
T |
|
| Q |
115 |
aattccaatctacataagagaaattttaagaaaatataattaattattaatggaccgaaattgaaaacataaataacattaacacacatgatacatgcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9629529 |
aattccaatctacataagagaaattttaagaaaatataattaattattaatggaccaaaattgaaaacataaataacattaacacacatgatacatgcat |
9629628 |
T |
|
| Q |
215 |
actcaatcattagctgctatgaattaaataaacaatattggaccatacattgattttttcatcaaatacaaacaatgctagaatgatgttatgatataca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
9629629 |
actcaatcattagctgctatgaattaaataaacaatattggaccatacattcattttttcaccaaatacatacaatgccagaatgatgttatgatataca |
9629728 |
T |
|
| Q |
315 |
tccctggagttccagaaatgatcagtagataaaagatgacttgtgtactgcatgtattttattagttattat |
386 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
9629729 |
tccctggtgtttcagaaatgatcagtagagaaaagatgctttgtgtactgcatgtcattgattagttattat |
9629800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 41258637 - 41258571
Alignment:
| Q |
65 |
aatgtttgctggatttgttgagcaagttcttcagcactgagttggcattcaattccaatctacataa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
41258637 |
aatgtttgctggatttgttgagcaagttcttcagcactcagttggcattcaattccaatctatataa |
41258571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University