View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17348_low_9 (Length: 389)
Name: NF17348_low_9
Description: NF17348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17348_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 1252500 - 1252150
Alignment:
| Q |
20 |
gactgagttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgc |
119 |
Q |
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| T |
1252500 |
gactgtgttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttacaagacaaatcttg--aagtaaattaaaaaactatatgc |
1252403 |
T |
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| Q |
120 |
caatatcaattgaaaaacatcttttcaaaaattgcttgataaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnnntgac |
219 |
Q |
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| T |
1252402 |
caatattaattgaaaaacatctttttaaaaattgcttgataaacttattttgacatgttttaaagggatgtttgatgataacaatggtaaaaaaaatgac |
1252303 |
T |
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| Q |
220 |
ttggacaatgattgcatgtgggaatatgatggtgaaagttttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccacta |
319 |
Q |
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| T |
1252302 |
ttggacaatgattgcatgtgggaatatgatggtgaaagttttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccacta |
1252203 |
T |
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| Q |
320 |
ggcttacgctgtaagaggagaagttgcagacttgcagttaccgtgatgcacac |
372 |
Q |
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| T |
1252202 |
ggcttacgctgtaagaggagaagttgcagacttgcagttaccgcgatgcacac |
1252150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 372
Target Start/End: Complemental strand, 42019286 - 42018923
Alignment:
| Q |
26 |
gttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatat |
125 |
Q |
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| T |
42019286 |
gttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatat |
42019187 |
T |
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| Q |
126 |
caattgaaaaacatcttt-------tcaaaaattgcttgataaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnnntga |
218 |
Q |
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| T |
42019186 |
taattgaaaaacatctttaaaaattttaaaaattgcttgataaacttattttggcatgttttaaagggatgtttgatgataacaatggtaaaaaaaatga |
42019087 |
T |
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| Q |
219 |
cttggacaatgattg----------catgtgggaatatgatggtgaaagttttctgggtgacgatatgggggagaattattacgacgatcatctgttgaa |
308 |
Q |
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| T |
42019086 |
cttggacaatgattgtgaaggattgcatgtgggaatatgatgctgaaagttttctgggtgacgatatgggggagaattatttcaacgatcatctgttgaa |
42018987 |
T |
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| Q |
309 |
atcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagttaccgtgatgcacac |
372 |
Q |
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| T |
42018986 |
accgaccactaggcttacgctgtaagagaagaagttgcagacttgcagttaccgcgatgcacac |
42018923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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