View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17349_high_1 (Length: 524)
Name: NF17349_high_1
Description: NF17349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17349_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 5189844 - 5189355
Alignment:
| Q |
19 |
ccaatcattggatactcacacactaacctagcctagaaatcttacacgtgtcattttggaccccatcttctatttttaccttcatgaggaagattaaaat |
118 |
Q |
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| T |
5189844 |
ccaatcattggatcctcacacactaacctagcctagaaatcttacacgtgtcattttggaccccatcttctatttttaccttcatgaggaagattaaaat |
5189745 |
T |
|
| Q |
119 |
ccaatctttttctaggacccacttgctgatgtcactgtnnnnnnngtgaatatgacccttaaattacaccccaccaccaccatatagtgacaattgactc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5189744 |
ccaatctttttctaggacccacttgctgatgtcactgtaaaaaaagtgaatatgacccttaaattacaccccaccaccaccatatagtgacaactgactc |
5189645 |
T |
|
| Q |
219 |
aaaagctatacattattagaccaaaacacccccataaatatcgttatttacatgtagtacctcctaccatatgcctttaaatacgagccccttaagcagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
5189644 |
aaaagctatacattattagaccaaaacacccccataaatatcattatttacatgtagtacctcctacaatatgcctttaaatacgagtcccttaagcagc |
5189545 |
T |
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| Q |
319 |
gtttcttccctttctctttctttcctttcactactttttacttagcaataaccatgctctcttccctctattcctccgatttcacggcgttagacgaaag |
418 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5189544 |
gtttcttccctttctccttctttcctttcactactttttacttagcaataaccatgctctcttccctctattcctccgatttcacggcgttagacaaaag |
5189445 |
T |
|
| Q |
419 |
tttaacgccgtgggatttttctaacattctgtcccccatccaacccaccagccctaagctcacttcaagctccggttcaggcgaaccaaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5189444 |
tttaacgccgtgggatttttctaacattctgtcccccatccaacccaccagccctaagctcacttcaagctccggttcaggcgaaccaaa |
5189355 |
T |
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