View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17349_high_2 (Length: 479)

Name: NF17349_high_2
Description: NF17349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17349_high_2
NF17349_high_2
[»] chr3 (21 HSPs)
chr3 (95-318)||(20795275-20795498)
chr3 (95-318)||(30160446-30160669)
chr3 (117-247)||(5750601-5750733)
chr3 (117-247)||(5787560-5787692)
chr3 (128-246)||(37197829-37197946)
chr3 (318-402)||(20783869-20783953)
chr3 (128-307)||(20919268-20919445)
chr3 (128-307)||(20928230-20928407)
chr3 (128-247)||(6445165-6445282)
chr3 (262-307)||(2765962-2766007)
chr3 (318-399)||(38353662-38353743)
chr3 (262-299)||(50246543-50246580)
chr3 (318-402)||(50246425-50246509)
chr3 (202-296)||(9270699-9270792)
chr3 (188-296)||(37187502-37187608)
chr3 (263-319)||(44907730-44907786)
chr3 (115-174)||(2766094-2766153)
chr3 (337-402)||(2765845-2765910)
chr3 (314-391)||(37198032-37198109)
chr3 (48-80)||(10027340-10027372)
chr3 (48-80)||(42392259-42392291)
[»] scaffold0490 (1 HSPs)
scaffold0490 (48-318)||(9080-9350)
[»] chr6 (16 HSPs)
chr6 (55-318)||(21992535-21992798)
chr6 (262-452)||(32681527-32681719)
chr6 (123-247)||(33452320-33452444)
chr6 (123-247)||(13705495-13705617)
chr6 (123-195)||(15654083-15654155)
chr6 (123-195)||(15664036-15664108)
chr6 (123-316)||(27434709-27434901)
chr6 (128-307)||(4856854-4857034)
chr6 (128-247)||(30890054-30890175)
chr6 (128-296)||(11550248-11550417)
chr6 (201-296)||(4749520-4749615)
chr6 (193-239)||(15654187-15654233)
chr6 (147-307)||(1607912-1608073)
chr6 (199-239)||(15664142-15664182)
chr6 (262-296)||(33452251-33452285)
chr6 (128-156)||(1608073-1608101)
[»] chr1 (13 HSPs)
chr1 (112-312)||(19095344-19095544)
chr1 (177-319)||(8313947-8314088)
chr1 (117-307)||(45914958-45915149)
chr1 (117-307)||(22544099-22544288)
chr1 (318-402)||(45915182-45915266)
chr1 (128-307)||(15535170-15535348)
chr1 (123-296)||(46514368-46514540)
chr1 (128-197)||(8106928-8106997)
chr1 (128-197)||(8111574-8111643)
chr1 (200-246)||(3417383-3417429)
chr1 (128-197)||(8314029-8314098)
chr1 (47-81)||(41322437-41322471)
chr1 (48-81)||(16995447-16995480)
[»] chr8 (62 HSPs)
chr8 (123-247)||(15605962-15606086)
chr8 (123-247)||(15614315-15614439)
chr8 (123-247)||(15648131-15648255)
chr8 (128-247)||(10894547-10894666)
chr8 (123-247)||(15624343-15624467)
chr8 (128-242)||(15624165-15624279)
chr8 (123-241)||(15637492-15637610)
chr8 (128-242)||(15647953-15648067)
chr8 (123-247)||(15637302-15637426)
chr8 (123-241)||(15637676-15637794)
chr8 (123-242)||(15613808-15613928)
chr8 (123-247)||(15637119-15637243)
chr8 (128-247)||(16250411-16250529)
chr8 (123-242)||(15636942-15637060)
chr8 (128-234)||(20540820-20540926)
chr8 (131-242)||(15605455-15605567)
chr8 (123-247)||(15614133-15614256)
chr8 (95-197)||(38050219-38050321)
chr8 (123-216)||(15605628-15605721)
chr8 (123-247)||(15605780-15605903)
chr8 (123-216)||(15613981-15614073)
chr8 (144-319)||(287343-287517)
chr8 (176-247)||(15624526-15624597)
chr8 (123-252)||(10895864-10895992)
chr8 (174-247)||(15613469-15613541)
chr8 (123-182)||(15605343-15605402)
chr8 (176-247)||(15648314-15648385)
chr8 (174-247)||(15923611-15923684)
chr8 (174-247)||(15605117-15605188)
chr8 (117-307)||(18666790-18666980)
chr8 (319-402)||(17890717-17890800)
chr8 (319-402)||(19742760-19742843)
chr8 (128-245)||(25113397-25113514)
chr8 (128-319)||(27521081-27521272)
chr8 (318-402)||(8351380-8351464)
chr8 (318-402)||(35136896-35136980)
chr8 (117-314)||(8362304-8362501)
chr8 (123-182)||(15613696-15613755)
chr8 (128-247)||(17895021-17895138)
chr8 (205-247)||(4930230-4930272)
chr8 (200-319)||(12167104-12167224)
chr8 (200-319)||(12411532-12411652)
chr8 (128-197)||(23136464-23136533)
chr8 (202-242)||(15923951-15923991)
chr8 (318-402)||(45250829-45250913)
chr8 (123-182)||(15923839-15923898)
chr8 (123-300)||(45250945-45251121)
chr8 (117-307)||(23689093-23689282)
chr8 (200-319)||(16291992-16292110)
chr8 (330-402)||(18667045-18667117)
chr8 (318-402)||(25064162-25064246)
chr8 (128-180)||(35136706-35136758)
chr8 (128-218)||(772597-772688)
chr8 (123-182)||(15636830-15636889)
chr8 (321-402)||(8362524-8362605)
chr8 (46-81)||(19190675-19190710)
chr8 (262-296)||(4930305-4930339)
chr8 (129-246)||(23161056-23161172)
chr8 (128-157)||(25063975-25064004)
chr8 (270-319)||(40267245-40267294)
chr8 (276-312)||(17890821-17890857)
chr8 (276-312)||(19742703-19742739)
[»] scaffold0114 (1 HSPs)
scaffold0114 (128-247)||(34291-34410)
[»] chr4 (14 HSPs)
chr4 (123-247)||(37069683-37069805)
chr4 (128-244)||(17461926-17462041)
chr4 (128-319)||(24003-24193)
chr4 (123-316)||(18066656-18066848)
chr4 (183-319)||(13914663-13914798)
chr4 (321-402)||(14253031-14253112)
chr4 (128-307)||(35647971-35648149)
chr4 (205-247)||(13923288-13923330)
chr4 (202-252)||(14288140-14288190)
chr4 (263-318)||(52538248-52538303)
chr4 (262-296)||(10780389-10780423)
chr4 (262-296)||(10973998-10974032)
chr4 (262-296)||(13923219-13923253)
chr4 (262-296)||(37069617-37069651)
[»] chr5 (7 HSPs)
chr5 (128-247)||(501100-501220)
chr5 (128-247)||(36647960-36648079)
chr5 (117-307)||(27588612-27588802)
chr5 (200-319)||(19205828-19205946)
chr5 (128-197)||(9663066-9663135)
chr5 (318-402)||(27588833-27588917)
chr5 (200-245)||(29857767-29857812)
[»] chr2 (14 HSPs)
chr2 (123-217)||(11127769-11127864)
chr2 (155-319)||(45049526-45049689)
chr2 (117-307)||(21119845-21120035)
chr2 (118-402)||(20103500-20103800)
chr2 (318-402)||(16139495-16139579)
chr2 (318-402)||(24971974-24972058)
chr2 (264-307)||(24972129-24972172)
chr2 (200-245)||(5243259-5243304)
chr2 (318-402)||(21120061-21120144)
chr2 (117-169)||(24972272-24972324)
chr2 (128-180)||(41747366-41747418)
chr2 (155-193)||(31300006-31300044)
chr2 (262-307)||(41747500-41747545)
chr2 (48-80)||(5244826-5244858)
[»] chr7 (7 HSPs)
chr7 (115-305)||(7946423-7946613)
chr7 (321-402)||(29494197-29494278)
chr7 (262-307)||(29494118-29494163)
chr7 (129-246)||(29493987-29494104)
chr7 (2-49)||(12024979-12025026)
chr7 (318-402)||(7946309-7946395)
chr7 (204-245)||(30878825-30878866)
[»] scaffold0018 (1 HSPs)
scaffold0018 (132-320)||(67167-67354)
[»] scaffold0003 (1 HSPs)
scaffold0003 (123-316)||(52462-52654)
[»] scaffold0155 (2 HSPs)
scaffold0155 (117-307)||(26657-26847)
scaffold0155 (338-402)||(26883-26947)
[»] scaffold0022 (1 HSPs)
scaffold0022 (128-319)||(101102-101293)
[»] scaffold0216 (3 HSPs)
scaffold0216 (318-402)||(18252-18336)
scaffold0216 (262-307)||(18179-18224)
scaffold0216 (320-402)||(25444-25526)
[»] scaffold0289 (1 HSPs)
scaffold0289 (123-296)||(22068-22239)
[»] scaffold0059 (2 HSPs)
scaffold0059 (128-307)||(67125-67302)
scaffold0059 (128-307)||(75230-75407)
[»] scaffold0179 (1 HSPs)
scaffold0179 (266-339)||(32036-32109)
[»] scaffold0191 (1 HSPs)
scaffold0191 (129-252)||(17020-17139)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 95 - 318
Target Start/End: Complemental strand, 20795498 - 20795275
Alignment:
Q  95 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 194  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20795498 aaagtacacgtggcaagcttatattctccatcccatttaatgttttcatatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 20795399  T
Q  195 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||    
T  20795398 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatgaatcatgatatgatttttttttctatatatagacaatttgtttttcattattttc 20795299  T
Q  295 atgtgtttcttcctcccataaaaa 318  Q
    || | | ||||||||||| |||||    
T  20795298 atctatctcttcctcccacaaaaa 20795275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 95 - 318
Target Start/End: Original strand, 30160446 - 30160669
Alignment:
Q  95 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 194  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30160446 aaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 30160545  T
Q  195 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| |||||||||||||||    
T  30160546 aaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttatttttcattattttc 30160645  T
Q  295 atgtgtttcttcctcccataaaaa 318  Q
    || | | ||||||||||| |||||    
T  30160646 atctatctcttcctcccacaaaaa 30160669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 5750733 - 5750601
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcattt 215  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||    
T  5750733 attccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatgactcattt 5750634  T
Q  216 g-tttttcatgagccaatcaaaatggatcatga 247  Q
    | |||||||||||||||||||||||||||||||    
T  5750633 gctttttcatgagccaatcaaaatggatcatga 5750601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 5787692 - 5787560
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcattt 215  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||    
T  5787692 attccccatctcatctaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccagtaaaaaaaaggatgatgactcattt 5787593  T
Q  216 g-tttttcatgagccaatcaaaatggatcatga 247  Q
    | |||||||||||||||||||||||||||||||    
T  5787592 gctttttcatgagccaatcaaaatggatcatga 5787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 37197829 - 37197946
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| |||||  ||||||| ||    
T  37197829 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttagttttcatcag 37197927  T
Q  228 ccaatcaaaatggatcatg 246  Q
    ||||||||||| |||||||    
T  37197928 ccaatcaaaattgatcatg 37197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 20783953 - 20783869
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  20783953 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatcta 20783869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 20919268 - 20919445
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||  ||||||  ||    
T  20919268 catttaatgttttcttaccatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgattcatgacacatttagttttcaccag 20919366  T
Q  228 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||| |||||||  |||          |||||||| ||||||||||||||| |||||||||| ||| ||||||    
T  20919367 ccaatcaaaattgatcatgtcatg-tttttttccctatatattgacaatttgtttttctttattttcatatgtctcttcc 20919445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 20928230 - 20928407
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||  ||||||  ||    
T  20928230 catttaatgttttcttaccatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgattcatgacacatttagttttcaccag 20928328  T
Q  228 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||| |||||||  |||          |||||||| ||||||||||||||| |||||||||| ||| ||||||    
T  20928329 ccaatcaaaattgatcatgtcatg-tttttttccctatatattgacaatttgtttttctttattttcatatgtctcttcc 20928407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 6445282 - 6445165
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| |||   |||| | | | ||||| ||||||| |||||||||||||| ||||| |||||    
T  6445282 catttaatgtttt-ttatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagag-atcatgactcatttattttttatgag 6445185  T
Q  228 ccaatcaaaatggatcatga 247  Q
    ||||||||||| ||||||||    
T  6445184 ccaatcaaaattgatcatga 6445165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 2766007 - 2765962
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2766007 ctatatatagacaatttgtttttcattattttcatgtgtctcttcc 2765962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 38353662 - 38353743
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtat 399  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||| |||||    
T  38353662 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatctgtat 38353743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 50246580 - 50246543
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcatgtg 299  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50246580 ctatatatagacaatttgtttttcattattttcatgtg 50246543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 50246509 - 50246425
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||| | |||||||| || | |||||| || ||| || ||||| || ||||||||||||||||||||||||||    
T  50246509 aagtattttatgtgttgtaaaagcatagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatcta 50246425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 9270792 - 9270699
Alignment:
Q  202 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||||||| |||||||| ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  9270792 atcatgactcatttatttttcattagccaattaaaattgatcatgacatga-tttttttcctatatatagacaacttgcttttcattattttcat 9270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 296
Target Start/End: Original strand, 37187502 - 37187608
Alignment:
Q  188 ccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcat 287  Q
    ||||| ||||||| |||| ||||||||| ||||| |||||||||||||||| |||||||| ||||         ||||||||| |||||||| |||||||    
T  37187502 ccaatcaaaagag-atcacgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttttctatatataaacaatttg-ttttcat 37187599  T
Q  288 tattttcat 296  Q
    ||| |||||    
T  37187600 tatcttcat 37187608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 44907786 - 44907730
Alignment:
Q  263 tatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    |||||| |||||||||| |||||||||||||||| |   ||||||||||||||||||    
T  44907786 tatatagagacaatttgcttttcattattttcatctacatcttcctcccataaaaaa 44907730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 2766153 - 2766094
Alignment:
Q  115 atattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatt 174  Q
    ||||||| |||| |||||||||||||||||||||| ||||||| || |||| ||| ||||    
T  2766153 atattcttcatctcatttaatgttttcttatcatctaatcaaattgaattacgactcatt 2766094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 2765910 - 2765845
Alignment:
Q  337 aaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||||| || | |||||| || ||| || ||||| || ||||||||||||||||||||||||||    
T  2765910 aaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatcta 2765845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 37198032 - 37198109
Alignment:
Q  314 aaaaaagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttctttttt 391  Q
    |||||||||||||||||||||| |||||||  || | ||||||||| ||| || |||||| | || ||||| ||||||    
T  37198032 aaaaaagtattttctgtgttttaaaagcatggaagtttaatcacttggttgtatattatgaggtttattttatttttt 37198109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 10027372 - 10027340
Alignment:
Q  48 atctttttctttatctttattatatatatttgc 80  Q
    |||||| ||||||||||||||||||||||||||    
T  10027372 atctttatctttatctttattatatatatttgc 10027340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 42392259 - 42392291
Alignment:
Q  48 atctttttctttatctttattatatatatttgc 80  Q
    |||||| ||||||||||||||||||||||||||    
T  42392259 atctttatctttatctttattatatatatttgc 42392291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 48 - 318
Target Start/End: Original strand, 9080 - 9350
Alignment:
Q  48 atctttttctttatctttattatatatatttgcgttannnnnnnnnnaaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatca 147  Q
    |||||| ||||||||||||||||||||||||| | ||          |||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9080 atctttatctttatctttattatatatatttgtgctattttttttaaaaagtacacgtggtaagcttatattttccatcccatttaatgttttcttatca 9179  T
Q  148 tccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9180 tccaatcaaaatggattataacacatttattttatatcaaccaataaaaagaggatcatgactcatttatttttcatgagccaatcaaaatggatcatga 9279  T
Q  248 tatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 318  Q
    |||||         ||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||    
T  9280 tatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaa 9350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 55 - 318
Target Start/End: Complemental strand, 21992798 - 21992535
Alignment:
Q  55 tctttatctttattatatatatttgcgttannnnnnnnnnaaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatc 154  Q
    ||||||||||||||||||||||||||| ||          |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21992798 tctttatctttattatatatatttgcgctattttttttt-aaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaatc 21992700  T
Q  155 aaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatga-n 253  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||      
T  21992699 aaaatggattatgacacatttattttatatcaaccaatcaaaagaggatcatgactcatttgtttttcttgagccaatcaaaatggatcatgatatgatt 21992600  T
Q  254 nnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 318  Q
            ||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||    
T  21992599 ttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctcccacaaaaa 21992535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 262 - 452
Target Start/End: Original strand, 32681527 - 32681719
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaagtattttc-tgtgttttgaaagcataaaattgtaatcacttt 360  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  32681527 ctatatatagacaatttatttttcattattttcatgtgtttcttcctcccataaaaaagttttttcttgtgttttgaaagcatgaaattgtaatcacttt 32681626  T
Q  361 gttctagattatgggattgattttc-ttttttatttgtatctatcagctaatgttactctctcaggtttcattggaaagcatgtttctacatt 452  Q
     |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  32681627 cttctagattatgggattgattttctttttttatttgtatctatcagttaatgttactctctcaggtctcattggaaagcatgtttttacatt 32681719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 33452444 - 33452320
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  33452444 catctcatttaatgttttcttatcatccaatcaaaatgaattatgaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 33452345  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||||    
T  33452344 atgagccaatcaaaatggatcatga 33452320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 13705617 - 13705495
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  13705617 catctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 13705520  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||||    
T  13705519 atgagccaatcaaaatggatcatga 13705495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 15654083 - 15654155
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 195  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654083 catctcatttaatactttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 15654155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 15664036 - 15664108
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 195  Q
    |||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15664036 catctcatttaatactttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaa 15664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 316
Target Start/End: Original strand, 27434709 - 27434901
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  27434709 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaagat-ggaccatgactcatttagttttc 27434807  T
Q  223 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaa 316  Q
    |  | ||||||||||| ||| |    ||||         || |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  27434808 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcatgtgtctcttccccccataaa 27434901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 4857034 - 4856854
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatg 225  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| ||||| |  |||||||     
T  4857034 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttatagttttcatc 4856936  T
Q  226 agccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||||| |||||||    ||         |||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  4856935 agccaatcaaaattgatcatgtctagatttttttcactatatattgacaatttgtttttcattgttttcatatgtctcttcc 4856854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 30890175 - 30890054
Alignment:
Q  128 catttaatgttttctt-atcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagag-gatcatgactcatttgtttttcatg 225  Q
    ||||||||||||| || |||||||||||||||| ||| ||||| ||| ||||||  | ||||||||||||| |  ||||||||||||||| |||| ||||    
T  30890175 catttaatgttttttttatcatccaatcaaaatagatcatgactcatatatttttcaacaaccaataaaaaaattgatcatgactcatttattttacatg 30890076  T
Q  226 agccaatcaaaatggatcatga 247  Q
    | ||||||||||| ||||||||    
T  30890075 atccaatcaaaattgatcatga 30890054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 11550248 - 11550417
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatg 225  Q
    |||||||||||||||||||||||||| ||| |  |||||||| |||||||||| ||| ||||||| ||||  |  ||||||| ||||| |  |||||||     
T  11550248 catttaatgttttcttatcatccaattaaattaaattatgactcatttattttttattaaccaatcaaaa-tgattcatgacacatttatagttttcatc 11550346  T
Q  226 agccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 296  Q
    ||||||||||||| |||||||   |||         |||||||| |||||||||||||||||| |||||||    
T  11550347 agccaatcaaaattgatcatgtcttgatttttttccctatatattgacaatttgtttttcattgttttcat 11550417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 4749520 - 4749615
Alignment:
Q  201 gatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 296  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||| ||||          |||||||| ||||||||||||||||||| |||||    
T  4749520 gatcatgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttctatatatataaacaatttgtttttcattatcttcat 4749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 15654187 - 15654233
Alignment:
Q  193 aaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatg 239  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||    
T  15654187 aaaaaaaggatcatgactcatttgtttttcatgttccaatcaaaatg 15654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 1608073 - 1607912
Alignment:
Q  147 atccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgt--ttttcatgagccaatcaaaatggatca 244  Q
    ||||||||||| || ||||| || |||||||||| ||| | ||||| ||||  |  ||||||| ||||| |  ||||||| ||||||||||||| |||||    
T  1608073 atccaatcaaattgaattataactcatttattttttattagccaatcaaaat-gattcatgacacatttatagttttcatcagccaatcaaaattgatca 1607975  T
Q  245 tgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||  ||||         |||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  1607974 tgtcatgatttttttccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 1607912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 15664142 - 15664182
Alignment:
Q  199 aggatcatgactcatttgtttttcatgagccaatcaaaatg 239  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  15664142 aggatcatgactcatttgtttttcatgttccaatcaaaatg 15664182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 33452285 - 33452251
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||||||||||||||||||| ||||||||    
T  33452285 ctatatatagacaatttgtttttcatcattttcat 33452251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 1608101 - 1608073
Alignment:
Q  128 catttaatgttttcttatcatccaatcaa 156  Q
    |||||||||||||||||||||||||||||    
T  1608101 catttaatgttttcttatcatccaatcaa 1608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 112 - 312
Target Start/End: Original strand, 19095344 - 19095544
Alignment:
Q  112 cttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactc 211  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19095344 cttatattctccatcccatttaatgttttcttatcattcaataaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactc 19095443  T
Q  212 atttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctccc 311  Q
    ||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  19095444 atttgtttttcatgagccaatcaaaatggatcacgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcctccc 19095543  T
Q  312 a 312  Q
    |    
T  19095544 a 19095544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 8314088 - 8313947
Alignment:
Q  177 ttttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaat 276  Q
    |||| ||||||||||| |||| || |||||||||||||| ||||| || ||||||||||||| |||||||| ||||         ||||||||||||||     
T  8314088 ttttttatcaaccaatcaaaatag-atcatgactcatttattttttattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaa 8313990  T
Q  277 ttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    || ||||||||||||||||| |   | ||||||||||||||||    
T  8313989 ttatttttcattattttcatctacctattcctcccataaaaaa 8313947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 45914958 - 45915149
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| |||||||||||||||||||||||||||||| || ||||||||  ||| ||||| | || | ||||| || |  | | ||||||||||||    
T  45914958 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgacttattcatttttttattagccaattaagat-gaaccatgactcattt 45915056  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnc-tatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
      ||||||| | |||||||||||||||||||   |||         | | |||||||||||||||||||||||||||||||||||| ||||||    
T  45915057 agttttcatcaaccaatcaaaatggatcatgccttgattttttttccctgtatatagacaatttgtttttcattattttcatgtgtctcttcc 45915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 117 - 307
Target Start/End: Complemental strand, 22544288 - 22544099
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| ||||| | || | ||||| || |  | | ||||||||||||    
T  22544288 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaagat-gaaccatgactcattt 22544190  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
      ||||||| | ||||||||||| |||||||   |||         ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  22544189 agttttcatcaaccaatcaaaattgatcatgccttgatttttttc-ctatatataaacaatttgtttttcattattttcatgtgtctcttcc 22544099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 45915182 - 45915266
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| ||||||||||| | |||||| || ||| ||||||||    ||||||||||||||||||||||||||    
T  45915182 aagtattttatgtgttttaaaagcataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatcta 45915266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 15535348 - 15535170
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatc-atgactcatttgtttttcatg 225  Q
    |||||||||||||||||||||||||||||| || |||||||| |||| ||||| | || |  |||| ||  || || | |||||||||||  |||||||     
T  15535348 catttaatgttttcttatcatccaatcaaattgaattatgactcattcatttttttattagtcaatcaa--gatgaactatgactcatttagttttcatc 15535251  T
Q  226 agccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    | ||||||||||| |||||||   |||         ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  15535250 aaccaatcaaaattgatcatgccttgatttttttc-ctatatataaacaatttgtttttcattattttcatgtgtctcttcc 15535170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 296
Target Start/End: Original strand, 46514368 - 46514540
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||| | |||| |||||||||||  || | ||| |||||| ||| |||  |||||| ||||  | || |||| |||||| ||||||    
T  46514368 catctcatttaatgttttttcatcaaccaatcaaaatatatcacgactcatttactttttatttaccaatcaaaa-tgaatgatgattcatttatttttc 46514466  T
Q  223 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 296  Q
    || ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  46514467 attagccaattaaaattgatcatgacatgattttttcccctatatatagacaacttgcttttcattattttcat 46514540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 8106997 - 8106928
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 197  Q
    ||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||| | |||||||| ||||    
T  8106997 catttaatgtttctttatcatccaatcaaaattgattatgactcatctattttacaacaaccaatcaaaa 8106928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 8111643 - 8111574
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 197  Q
    ||||||||||||  |||||||||||||||||| ||||||||| ||| ||||||| | |||||||| ||||    
T  8111643 catttaatgtttctttatcatccaatcaaaattgattatgactcatctattttacaacaaccaatcaaaa 8111574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 3417383 - 3417429
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatg 246  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  3417383 ggatcatgactcatttatttttcatcagccaatcaaaattgatcatg 3417429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 8314098 - 8314029
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 197  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||    
T  8314098 catttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaa 8314029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 41322437 - 41322471
Alignment:
Q  47 aatctttttctttatctttattatatatatttgcg 81  Q
    ||||||| |||||||||||||||||||||||||||    
T  41322437 aatctttatctttatctttattatatatatttgcg 41322471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 16995447 - 16995480
Alignment:
Q  48 atctttttctttatctttattatatatatttgcg 81  Q
    |||||| |||||||||||||||||||||||||||    
T  16995447 atctttatctttatctttattatatatatttgcg 16995480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 62)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15606086 - 15605962
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  15606086 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgatcatgactcatttgtttttc 15605987  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||| ||||||||||||    
T  15605986 atgagccaatcataatggatcatga 15605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15614439 - 15614315
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  15614439 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgatcatgactcatttgtttttc 15614340  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||| ||||||||||||    
T  15614339 atgagccaatcataatggatcatga 15614315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15648255 - 15648131
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  15648255 catctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttc 15648156  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||||    
T  15648155 atgagccaatcaaaatggatcatga 15648131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 10894547 - 10894666
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||    
T  10894547 catttaatgttttcttatcatccaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaatgattataactcatttgtttttcatgag 10894646  T
Q  228 ccaatcaaaatggatcatga 247  Q
    ||||||||||||||||||||    
T  10894647 ccaatcaaaatggatcatga 10894666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15624467 - 15624343
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  15624467 catctcatttaatgttttcttatcatccaatcaaaaaagattttgacacatttattttatatcaaccaatagaaaaaggatcatgactcatttgtttttc 15624368  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    || ||||||||||||||||||||||    
T  15624367 atcagccaatcaaaatggatcatga 15624343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 15624279 - 15624165
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15624279 catttaatgttttcttatcatccaatcaaaatggattttgacacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatgag 15624180  T
Q  228 ccaatcaaaatggat 242  Q
    ||||| |||||||||    
T  15624179 ccaattaaaatggat 15624165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 15637610 - 15637492
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15637610 catctcatttaatgttttcctatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 15637511  T
Q  223 atgagccaatcaaaatgga 241  Q
    |||| ||||||| ||||||    
T  15637510 atgatccaatcataatgga 15637492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 15648067 - 15647953
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  15648067 catttaatgttttcttatcatccaatcaaaatggattttggcacgtttattttatatcaaccaataaaaataggatcatgactcatttgtttttaatgag 15647968  T
Q  228 ccaatcaaaatggat 242  Q
    |||||||||||||||    
T  15647967 ccaatcaaaatggat 15647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15637426 - 15637302
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  15637426 catctcatttaatgttttcctatcatccaatgacaatggattttgacacatttattttatatcaaccaataaaaaatggatcatgactcatttgtttttc 15637327  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||| ||||||||||||    
T  15637326 atgagccaatcataatggatcatga 15637302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 15637794 - 15637676
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15637794 catctcatttaatgttttcttaacatccaatcagaatgaattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttgtttttc 15637695  T
Q  223 atgagccaatcaaaatgga 241  Q
    |||||||||||| ||||||    
T  15637694 atgagccaatcataatgga 15637676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 15613928 - 15613808
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaata-aaaagaggatcatgactcatttgttttt 221  Q
    |||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  15613928 catctcatttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaagcatcatgactcatttgttttt 15613829  T
Q  222 catgagccaatcaaaatggat 242  Q
    |||||||||||||||||||||    
T  15613828 catgagccaatcaaaatggat 15613808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15637243 - 15637119
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  15637243 catctcatttaatgttttcttatcattcaatcagaatggattttgacacatttattttatatcaaccaataaaaaaatgaccatgactcatttgtttttc 15637144  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||| ||| ||||||||    
T  15637143 atgagccaatcataatagatcatga 15637119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 16250411 - 16250529
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||| ||||||||| || |||||||||||    
T  16250411 catttaatgttttcttatcatccaatcaaaatagattatgacacatttgttttatatcaaccaatcaaaaaaggagcatgactca-ttatttttcatgag 16250509  T
Q  228 ccaatcaaaatggatcatga 247  Q
    ||||||||||||||||||||    
T  16250510 ccaatcaaaatggatcatga 16250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 15637060 - 15636942
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  15637060 catctcatttaat-ttttattatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttgttttta 15636962  T
Q  223 atgagccaatcaaaatggat 242  Q
    ||||| ||||||||||||||    
T  15636961 atgagtcaatcaaaatggat 15636942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 20540926 - 20540820
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  20540926 catttaacgtttttttatcctccaatcaaaatggattatgacacatttattttatatcaaccaataaaaaaagaatcataactcatttgtttttcatgag 20540827  T
Q  228 ccaatca 234  Q
    |||||||    
T  20540826 ccaatca 20540820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 15605567 - 15605455
Alignment:
Q  131 ttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaata-aaaagaggatcatgactcatttgtttttcatgagcc 229  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| |  ||||||||||||||||||||||||||||    
T  15605567 ttaatgttttcttatcatccaatcggaatggattttgacacatttattttatatcaaccaataaaaaaaaacatcatgactcatttgtttttcatgagcc 15605468  T
Q  230 aatcaaaatggat 242  Q
    |||||||||||||    
T  15605467 aatcaaaatggat 15605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15614256 - 15614133
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||     
T  15614256 catctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aagatcatgacccatttgtttttt 15614158  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||||| ||| ||||||||    
T  15614157 atgagccaatcataatagatcatga 15614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 38050321 - 38050219
Alignment:
Q  95 aaaggacacgtggcaagcttatattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataa 194  Q
    |||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  38050321 aaagtacatgtggcaagcttatattctccatctcatttaatattttcttatcatccaatcaaaatggattatgacacatttattttatatcatccaatca 38050222  T
Q  195 aaa 197  Q
    |||    
T  38050221 aaa 38050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 15605721 - 15605628
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttg 216  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15605721 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaaaaggatcatgactcatttg 15605628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 15605903 - 15605780
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||     
T  15605903 catctcatttaatgtttttttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aagatcatgacccatttgtttttt 15605805  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
    |||||||||| | ||| ||||||||    
T  15605804 atgagccaattataatagatcatga 15605780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 15614073 - 15613981
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttg 216  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15614073 catctcatttaatgttttcttatcatccaatcagaatggattttgacacatttattttatatcaaccaataaaaa-aggatcatgactcatttg 15613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 144 - 319
Target Start/End: Original strand, 287343 - 287517
Alignment:
Q  144 atcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatc 243  Q
    |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||||||||||||||| ||||| || ||||||||||||| ||||    
T  287343 atcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggatcatgactcatttattttttattagccaatcaaaattgatc 287441  T
Q  244 atgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    |||| || |         |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  287442 atgacataattttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 287517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 15624597 - 15624526
Alignment:
Q  176 attttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  15624597 attttatatcaaccaataaaaaaaggatcatgactcatttgttttttatgagccaatcataatggatcatga 15624526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 10895864 - 10895992
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||| |||||| |||||||| |||||| ||||| |||||||||| ||| |  |||| ||||  |||||||||||||||| ||||||    
T  10895864 catctcatttaatgtttttttatcaaccaatcaatatggatcatgactcatttattttttattagtcaatcaaaat-ggatcatgactcatttatttttc 10895962  T
Q  223 atgagccaatcaaaatggatcatgatatga 252  Q
    || ||||||||||||| |||||||| ||||    
T  10895963 attagccaatcaaaattgatcatgacatga 10895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 15613541 - 15613469
Alignment:
Q  174 ttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  15613541 ttattttatatcaaccaataaaaaaag-atcatgactcatttttttttcatgagccaatcaaaatggatcatga 15613469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15605402 - 15605343
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 182  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15605402 catctcatttaatgttttcttatcatccaatcaaaatggattttgacacatttattttat 15605343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 15648385 - 15648314
Alignment:
Q  176 attttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||    
T  15648385 attttacatcaaccaataaaaaaaggaccatgactcatttgttttttatgagccaatcataatggatcatga 15648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 15923684 - 15923611
Alignment:
Q  174 ttattttatatcaaccaataaaaagaggatcatgactcatttgttttt-catgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  15923684 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttttcatgagccaatcaaaatggatcatga 15923611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 15605188 - 15605117
Alignment:
Q  174 ttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||    
T  15605188 ttattttatatcaaccaataaaaaaag-atcatgactcattttttttt-atgagccaatcaaaatggatcatga 15605117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 18666790 - 18666980
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| ||||||||| ||| |||||||||||||||| || |||||||| |||| ||||| | || | ||||| || |  | | ||||||||||||    
T  18666790 attcttcatctcatttaatgcttttttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaagat-gaaccatgactcattt 18666888  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
      ||||||| | |||||||||||||||||||   |||         |||||||||| |||||||||||||||||||||||||||| ||||||    
T  18666889 agttttcatcaaccaatcaaaatggatcatgccttgatttttttccctatatataggcaatttgtttttcattattttcatgtgtctcttcc 18666980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 17890800 - 17890717
Alignment:
Q  319 agtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  17890800 agtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatcta 17890717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 19742760 - 19742843
Alignment:
Q  319 agtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  19742760 agtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatcta 19742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 25113514 - 25113397
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagag-gatcatgactcatttgtttttcatga 226  Q
    ||||||||||||| |||||||||||| ||||| ||||||||| || |||| | || | ||||||| |||| |  ||||||||||||||| |||||||| |    
T  25113514 catttaatgtttttttatcatccaattaaaatagattatgactcacttatat-attttaaccaatcaaaaaatagatcatgactcatttatttttcatta 25113416  T
Q  227 gccaatcaaaatggatcat 245  Q
    ||||||||||||| |||||    
T  25113415 gccaatcaaaatgaatcat 25113397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 319
Target Start/End: Complemental strand, 27521272 - 27521081
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcatttgtttttcatga 226  Q
    ||||||||| |||  ||||| ||||| |||||||||  ||   |||||||||| | |||| ||||| ||||  ||||||||||| |||| ||||||||||    
T  27521272 catttaatgcttttctatcaaccaattaaaatggatcctgcatcatttatttttttatcagccaatcaaaat-ggatcatgactaatttctttttcatga 27521174  T
Q  227 gccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    |||||||||||| || ||||  ||||         ||||| ||||| ||||||||||||||||||||||| |   ||||||||||||||||||    
T  27521173 gccaatcaaaattgaccatgtcatgattttttttcctatacatagataatttgtttttcattattttcatctacatcttcctcccataaaaaa 27521081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 8351380 - 8351464
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  8351380 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatcta 8351464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 35136896 - 35136980
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||    
T  35136896 aagtattttatgtgttttaaaagcatataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatcta 35136980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 117 - 314
Target Start/End: Original strand, 8362304 - 8362501
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| |||||||||||||||||||||||||||||| || |||||||| | || | |||| ||| | ||||| || |  | | ||||||||||||    
T  8362304 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactctttcatttttttattagccaatcaaga-tgaaccatgactcattt 8362402  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccata 314  Q
      ||||||| | ||||||||||| |||||||   |||          ||||||||||||||||||||||||||||||| ||| || |||||| ||||||    
T  8362403 agttttcatcaaccaatcaaaattgatcatgccttgatttttttccttatatatagacaatttgtttttcattatttttatgggtctcttccccccata 8362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15613755 - 15613696
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 182  Q
    |||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  15613755 catctcatttaatgttttcttatcatacaatcaaaacggattttgacacatttattttat 15613696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 17895138 - 17895021
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||| |||   |||| | | | ||||| ||||||| |||||||||||||| ||||| |||||    
T  17895138 catttaatgtttt-ttatcaaccaatcagaatggatcatgactcataatttttttcttagccaatcaaaagag-atcatgactcatttattttttatgag 17895041  T
Q  228 ccaatcaaaatggatcatga 247  Q
    ||||||||||| ||||||||    
T  17895040 ccaatcaaaattgatcatga 17895021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 4930230 - 4930272
Alignment:
Q  205 atgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4930230 atgactcatttgtttttcatgagccaatcaaaatggatcatga 4930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 12167224 - 12167104
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttg--tttttcattattttcatg 297  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| | ||||         ||||||||| ||||||||  ||||| |||||||||||     
T  12167224 ggatcatgactcatttatttttcatgagccaatcaaaattgatcataacatga-ttttttcactatatataaacaatttggtttttttattattttcatc 12167126  T
Q  298 tgtttcttcctcccataaaaaa 319  Q
    | | ||||||||||||||||||    
T  12167125 tatctcttcctcccataaaaaa 12167104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 12411652 - 12411532
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttg--tttttcattattttcatg 297  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| | ||||         ||||||||| ||||||||  ||||| |||||||||||     
T  12411652 ggatcatgactcatttatttttcatgagccaatcaaaattgatcataacatga-ttttttcactatatataaacaatttggtttttttattattttcatc 12411554  T
Q  298 tgtttcttcctcccataaaaaa 319  Q
    | | ||||||||||||||||||    
T  12411553 tatctcttcctcccataaaaaa 12411532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 23136464 - 23136533
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 197  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||| ||||    
T  23136464 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa 23136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 15923991 - 15923951
Alignment:
Q  202 atcatgactcatttgtttttcatgagccaatcaaaatggat 242  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15923991 atcatgactcatttgtttttcatgagccaatcaaaatggat 15923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 45250913 - 45250829
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||||| || |||||||||||||||| |||||||||    
T  45250913 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatcta 45250829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15923898 - 15923839
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 182  Q
    |||| |||||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  15923898 catctcatttaatattttcttatcatccaatcaaaacagattttgacacatttattttat 15923839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 300
Target Start/End: Complemental strand, 45251121 - 45250945
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttgttttt 221  Q
    |||| ||||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | || || || |  | | ||||||||||||  ||||    
T  45251121 catctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccgatcaaga-tgaaccatgactcatttagtttt 45251023  T
Q  222 catgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgt 300  Q
    ||| | ||||||||||| |||||||   |||         |||||||||||||||||||||||||||||||||||||||    
T  45251022 catcaaccaatcaaaattgatcatgccttga-tttttttcctatatatagacaatttgtttttcattattttcatgtgt 45250945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 307
Target Start/End: Complemental strand, 23689282 - 23689093
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatc-atgactcatt 214  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| |  ||||   |||| || | ||||||||||    
T  23689282 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagtcaat--caagatgaactatgactcatt 23689185  T
Q  215 tgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    |  ||||||| | ||||||||||| |||||||   |||         ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23689184 tagttttcatcaaccaatcaaaattgatcatgccttga-tttttttcctatatataaacaatttgtttttcattattttcatgtgtctcttcc 23689093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 16291992 - 16292110
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttg-tttttcattattttcatgt 298  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| | ||||         ||||||||| |||||||| ||||| ||||||||||| |    
T  16291992 ggatcatgactcatttatttttcatgagtcaatcaaaattgatcataacatga--tttttcactatatataaacaatttgattttttattattttcatct 16292089  T
Q  299 gtttcttcctcccataaaaaa 319  Q
       ||||||||||||||||||    
T  16292090 acctcttcctcccataaaaaa 16292110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 18667045 - 18667117
Alignment:
Q  330 tgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||| ||||||||||| | |||||| || ||| |||||||| ||  |||||||||||||||||||||||||    
T  18667045 tgttttaaaagcataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatcta 18667117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 25064162 - 25064246
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| ||   ||||||||| ||| |  |||||||| |||||||| |||||||||||||||||    
T  25064162 aagtattttatgtgttttaaaagcatataaagttaatcacttggttgtcaattatggggttgattttattttttatttgtatcta 25064246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 35136706 - 35136758
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 180  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||| ||||    
T  35136706 catttaatgttttcttatcatccaatcaaattgaattatgactcatttgtttt 35136758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 772688 - 772597
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgtt 218  Q
    ||||||||||||  ||||||| ||||||||||| |||||||| ||| ||||||  | |||||||| |||||   ||||||||||||||||||    
T  772688 catttaatgtttctttatcattcaatcaaaatgaattatgactcatctatttttcaacaaccaatcaaaaaatagatcatgactcatttgtt 772597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #54
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 15636889 - 15636830
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat 182  Q
    |||| |||||||||| || ||||||||||||||||| |||||  ||||||||||||||||    
T  15636889 catctcatttaatgtatttttatcatccaatcaaaacggatttggacacatttattttat 15636830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #55
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 8362524 - 8362605
Alignment:
Q  321 tattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||| |||||||| |||||||| || | |||||| ||  || || ||||| || ||||||||||||||||||||||||||    
T  8362524 tattttatgtgttttaaaagcatataagtttaatcatttgattgtaaattatagggttgattttcttttttatttgtatcta 8362605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #56
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 19190675 - 19190710
Alignment:
Q  46 taatctttttctttatctttattatatatatttgcg 81  Q
    |||||||| |||||||||||||||||||||||||||    
T  19190675 taatctttatctttatctttattatatatatttgcg 19190710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #57
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 4930305 - 4930339
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||||||||||||||||||| ||||||||    
T  4930305 ctatatatagacaatttgtttttcatcattttcat 4930339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 23161172 - 23161056
Alignment:
Q  129 atttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagc 228  Q
    |||||||||||||||| ||| |||||||| || || ||||| ||||| |||| ||| |  |||| ||||  | |||||||| |||||  |||||||  ||    
T  23161172 atttaatgttttcttaacatacaatcaaattgaatcatgactcatttcttttttattagtcaatcaaaa-tgaatcatgacacatttagttttcataggc 23161074  T
Q  229 caatcaaaatggatcatg 246  Q
    |||||||||| |||||||    
T  23161073 caatcaaaattgatcatg 23161056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 25063975 - 25064004
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaa 157  Q
    ||||||||||||||||||||||||||||||    
T  25063975 catttaatgttttcttatcatccaatcaaa 25064004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #60
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 40267294 - 40267245
Alignment:
Q  270 agacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    |||||||||| |||||||||||||||| |   ||||||||||||||||||    
T  40267294 agacaatttgcttttcattattttcatctacatcttcctcccataaaaaa 40267245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #61
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 17890857 - 17890821
Alignment:
Q  276 tttgtttttcattattttcatgtgtttcttcctccca 312  Q
    ||||||||||||||||||||||||| | |||||||||    
T  17890857 tttgtttttcattattttcatgtgtctattcctccca 17890821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #62
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 19742703 - 19742739
Alignment:
Q  276 tttgtttttcattattttcatgtgtttcttcctccca 312  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  19742703 tttgtttttcattattttcatgtgtctcttcccccca 19742739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 34410 - 34291
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  34410 catttaatgctttcatatcatctaatcaaaattgattatgacacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttcatgag 34311  T
Q  228 ccaatcaaaatggatcatga 247  Q
    ||||||||||||||| ||||    
T  34310 ccaatcaaaatggattatga 34291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 37069805 - 37069683
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  37069805 catctcatttaatgttttcttatcatccaatcaaaatgaatt--gaaacatttattttatatcaaccaataaaaaaaggattatgacacatttgtttttc 37069708  T
Q  223 atgagccaatcaaaatggatcatga 247  Q
     ||||||||||||||||||||||||    
T  37069707 gtgagccaatcaaaatggatcatga 37069683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 17462041 - 17461926
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    |||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||| ||| ||||     
T  17462041 catttagtgtttttttatcaaccaatcaaaatggattatgatacatttattttatatcaaccaat-aaaagaagattatgactcatttgtgttttatgaa 17461943  T
Q  228 ccaatcaaaatggatca 244  Q
    |||||||||||||||||    
T  17461942 ccaatcaaaatggatca 17461926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 128 - 319
Target Start/End: Complemental strand, 24193 - 24003
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||| ||| | |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||| ||||||||||| |||||||| ||    
T  24193 catttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggataatgactcatttatttttcattag 24095  T
Q  228 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    ||||||||||| |||||||| ||||         |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  24094 ccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 24003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 316
Target Start/End: Complemental strand, 18066848 - 18066656
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  18066848 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaagat-ggaccatgactcatttagttttc 18066750  T
Q  223 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaa 316  Q
    |  | ||||||||||| ||| |    ||||         || |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  18066749 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcatgtgtctcttccccccataaa 18066656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 319
Target Start/End: Complemental strand, 13914798 - 13914663
Alignment:
Q  183 atcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgttt 282  Q
    |||||||||| |||| || |||||||||||||| ||||| || ||||||||||||| |||||| | ||||         |||||||||||||| ||||||    
T  13914798 atcaaccaatcaaaatag-atcatgactcatttattttttattagccaatcaaaattgatcattacatgattttttttcctatatatagacaaattgttt 13914700  T
Q  283 ttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    |||||||||||||| |   ||||||||||||||||||    
T  13914699 ttcattattttcatctacctcttcctcccataaaaaa 13914663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 14253112 - 14253031
Alignment:
Q  321 tattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||| |||||||| |||||||| ||   ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  14253112 tattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatcta 14253031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 35647971 - 35648149
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    |||||||| ||||||||||||||||||||| || ||||||||  ||||||||| ||| | ||||| ||||  |  |||| || |||||  ||||||  ||    
T  35647971 catttaatattttcttatcatccaatcaaattgaattatgacttatttattttttattagccaatcaaaa-tgattcataacacatttagttttcactag 35648069  T
Q  228 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||| | |||||  ||||         |||||||| |||||||||||||||||||||||||| ||| ||||||    
T  35648070 ccaatcaaaattgttcatgtcatgattttttttcctatatattgacaatttgtttttcattattttcatatgtctcttcc 35648149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 13923330 - 13923288
Alignment:
Q  205 atgactcatttgtttttcatgagccaatcaaaatggatcatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13923330 atgactcatttgtttttcatgagccaatcaaaatggatcatga 13923288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 14288190 - 14288140
Alignment:
Q  202 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatga 252  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  14288190 atcatgactcatttatttttcattagccaatcaaaattgatcatgacatga 14288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 52538248 - 52538303
Alignment:
Q  263 tatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaa 318  Q
    |||||| |||||||||| |||||||||||||||| |   |||||||||||||||||    
T  52538248 tatatagagacaatttgcttttcattattttcatctacatcttcctcccataaaaa 52538303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 10780389 - 10780423
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||| ||||||||||||||||||||||||    
T  10780389 ctatatataggcaatttgtttttcattattttcat 10780423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 10973998 - 10974032
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||| ||||||||||||||||||||||||    
T  10973998 ctatatataggcaatttgtttttcattattttcat 10974032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 13923253 - 13923219
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||||||||||||||||||| ||||||||    
T  13923253 ctatatatagacaatttgtttttcatcattttcat 13923219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 37069651 - 37069617
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcat 296  Q
    |||||||||||||||||||||||||| ||||||||    
T  37069651 ctatatatagacaatttgtttttcatcattttcat 37069617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 501100 - 501220
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgtttttcatga 226  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||    
T  501100 catttaatactttcttatcatccaatcaaaattgattatgacacatttattttatatcaatcgataaaaaaaaggatcatgactcatttgtttttcatga 501199  T
Q  227 gccaatcaaaatggatcatga 247  Q
    |||||||||||| ||||||||    
T  501200 gccaatcaaaatagatcatga 501220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 36647960 - 36648079
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||  |||| || | |||||||||||| |||||     
T  36647960 catttaatgttttcttatcttctaatcaaaatagattatgtcacgtttattttatatcaaccaataaaagaaggaccacggctcatttgttttacatgaa 36648059  T
Q  228 ccaatcaaaatggatcatga 247  Q
    ||||||||||||||||||||    
T  36648060 ccaatcaaaatggatcatga 36648079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 27588612 - 27588802
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| |||||||| ||||||||||||||||||||| || |||||||| |||||| |||| ||| | ||||| || |  | | ||||||||||||    
T  27588612 attcttcatctcatttaatattttcttatcatccaatcaaattgaattatgactcatttatttttttattagccaatcaaga-tgaaccatgactcattt 27588710  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
      ||||||| | ||||||||||| |||||||   |||         | ||||||||||||||||||||||||||||||||||||| ||||||    
T  27588711 agttttcatcaaccaatcaaaattgatcatgccttgattttttttccaatatatagacaatttgtttttcattattttcatgtgtctcttcc 27588802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 19205946 - 19205828
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtg 299  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||   ||||         ||||||||||| ||||||||||||||||||||||| |     
T  19205946 ggatcatgactcatctatttttcatgagccaatcaaaattgatcatatcatgatttttttc-ctatatatagataatttgtttttcattattttcatcta 19205848  T
Q  300 tttcttcctcccataaaaaa 319  Q
      ||||||||||||||||||    
T  19205847 catcttcctcccataaaaaa 19205828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 9663135 - 9663066
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaa 197  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| | ||||| ||||    
T  9663135 catttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttattagccaatcaaaa 9663066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 27588833 - 27588917
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| || | |||||| ||  || |||||||| || |||||||||||||||| |||||||||    
T  27588833 aagtattttatgtgttttcaaagcatagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatcta 27588917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 29857767 - 29857812
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 245  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  29857767 ggatcatgactcatttatttttcatgagtcaatcaaaattgatcat 29857812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 11127769 - 11127864
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaat-aaaaagaggatcatgactcatttgt 217  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  11127769 catctcatttaatattttattatcaaccaatcaaaatggattatgacacatttattttatatcaaccaataaaaaaaaagatcatgactcatttgt 11127864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 319
Target Start/End: Original strand, 45049526 - 45049689
Alignment:
Q  155 aaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgann 254  Q
    ||||| ||| ||||| |||||| ||| ||| | ||||| ||||  |||||||||||||||| |||||||| ||||||||||||| |||||||| ||||      
T  45049526 aaaatagatcatgactcatttaatttttattagccaatcaaaat-ggatcatgactcatttatttttcattagccaatcaaaattgatcatgacatgatt 45049624  T
Q  255 nnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
           |||||||||||||| |||||||||||||||||||| |   ||||||||||||||||||    
T  45049625 ttttttcctatatatagacaaattgtttttcattattttcatctacctcttcctcccataaaaaa 45049689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 21119845 - 21120035
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || |||||||| |||| ||||||| || | ||||| || |  | | ||||||||||||    
T  21119845 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttattattagccaatcaagat-gaaccatgactcattt 21119943  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
      |||| || | ||||| ||||| ||||||| | |||         ||||||||||||||||||||||||||||||||||||||| ||||||    
T  21119944 agtttttatcaaccaattaaaattgatcatgctttgattttttttcctatatatagacaatttgtttttcattattttcatgtgtctcttcc 21120035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 402
Target Start/End: Original strand, 20103500 - 20103800
Alignment:
Q  118 ttctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttg 216  Q
    |||| |||| |||||||||||||||||||||||||||||| || |||||||| |||||| |||| ||| | ||||| || |  ||| ||||||||||||     
T  20103500 ttctacatctcatttaatgttttcttatcatccaatcaaattgaattatgactcatttatttttttattagccaatcaaga-tggaccatgactcattta 20103598  T
Q  217 tttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccat--- 313  Q
     ||||||  |  |||||||||| ||| |    ||||         ||||||||||||| ||||||||||||||||||||||||| |||||| |||||       
T  20103599 gttttcaccaatcaatcaaaattgattacacaatgatttttctctctatatatagacactttgtttttcattattttcatgtgtctcttccccccataaa 20103698  T
Q  314 -------------aaaaaagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatc 400  Q
                 ||| ||||| ||| |||||||| |||||||| ||   ||||||||| ||| ||||||||| | ||||||||||||||||||||||||    
T  20103699 cttttttccgtaaaaacaagtactttatgtgttttaaaagcatataagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatc 20103798  T
Q  401 ta 402  Q
    ||    
T  20103799 ta 20103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 16139495 - 16139579
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| || | ||||||||| ||| ||||||||||  ||||||||||||||||||||||||||    
T  16139495 aagtattttatgtgttttaaaagcatataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatcta 16139579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 24972058 - 24971974
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||||| || |||||||||||||||| |||||||||    
T  24972058 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatcta 24971974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 24972172 - 24972129
Alignment:
Q  264 atatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  24972172 atatatagacaatttgtttttcattattttcatgtgtctcttcc 24972129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 5243304 - 5243259
Alignment:
Q  200 ggatcatgactcatttgtttttcatgagccaatcaaaatggatcat 245  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  5243304 ggatcatgactcatttatttttcatgagccaatcaaaattgatcat 5243259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 21120061 - 21120144
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||| | || |||||||||||||||| |||||||||    
T  21120061 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattgtagg-ttgattttcttttttagttgtatcta 21120144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 24972324 - 24972272
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgac 169  Q
    ||||| |||| ||||||||| |||||||||||||||||||| || ||||||||    
T  24972324 attcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgac 24972272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 41747366 - 41747418
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttatttt 180  Q
    ||||||||||||| |||||||||||||||| || ||||||||  |||||||||    
T  41747366 catttaatgttttattatcatccaatcaaattgaattatgacttatttatttt 41747418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 31300006 - 31300044
Alignment:
Q  155 aaaatggattatgacacatttattttatatcaaccaata 193  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  31300006 aaaaaggattatgaaacatttattttatatcaaccaata 31300044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 41747500 - 41747545
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    |||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  41747500 ctatatattgacaatttgtttttcattgttttcatatgtctcttcc 41747545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 5244858 - 5244826
Alignment:
Q  48 atctttttctttatctttattatatatatttgc 80  Q
    |||||| ||||||||||||||||||||||||||    
T  5244858 atctttatctttatctttattatatatatttgc 5244826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 115 - 305
Target Start/End: Complemental strand, 7946613 - 7946423
Alignment:
Q  115 atattctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttat-atcaaccaataaaaagaggatcatgactcat 213  Q
    ||||||| |||| |||||||||||||||||||||||||||||| |  |||||||| |||| ||||| | || | ||||| || |  | | ||||||||||    
T  7946613 atattcttcatctcatttaatgttttcttatcatccaatcaaattaaattatgactcattcatttttttattagccaatcaagat-gaaccatgactcat 7946515  T
Q  214 ttgtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttctt 305  Q
    ||  ||||||| | ||||||||||||||||||| | |||         ||||||||||||||||||||||||||||||||||||||| ||||    
T  7946514 ttagttttcatcaaccaatcaaaatggatcatgttttgatttttttccctatatatagacaatttgtttttcattattttcatgtgtctctt 7946423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 29494197 - 29494278
Alignment:
Q  321 tattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||| |||||||| |||||||| || | |||||| || ||| |||||||| |||||||||||||||||||||||||||||    
T  29494197 tattttatgtgttttaaaagcatataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatcta 29494278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 29494118 - 29494163
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  29494118 ctatatatagacaatttgtttttcattattttcatttgtctcttcc 29494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 29493987 - 29494104
Alignment:
Q  129 atttaatgttttcttatcatccaatcaaaatggattatgacacattta-ttttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    |||||||| |||||||||||||||||||| || |||||||| |||| | |||| ||| | ||||| || |  | ||||||||||||||  ||||||| |     
T  29493987 atttaatgctttcttatcatccaatcaaattgaattatgactcattcatttttttattagccaatcaaga-tgaatcatgactcatttagttttcatcaa 29494085  T
Q  228 ccaatcaaaatggatcatg 246  Q
    ||||||||||| |||||||    
T  29494086 ccaatcaaaattgatcatg 29494104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 12025026 - 12024979
Alignment:
Q  2 cctttaggaccggtttggagatgtaacaaagggattggtatgtgtaat 49  Q
    ||||||||||||||||||| |||||| |||| ||||| ||||||||||    
T  12025026 cctttaggaccggtttggacatgtaataaagtgattgatatgtgtaat 12024979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 7946395 - 7946309
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagatta---tgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| ||| |||| ||||||||||| | |||||| || ||| |||||||   | || ||||||||||||||||||||||||||    
T  7946395 aagtattttatgttttttaaaagcataaaaatttaatca-ttggttgtagattaatatagggttgattttcttttttatttgtatcta 7946309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 30878825 - 30878866
Alignment:
Q  204 catgactcatttgtttttcatgagccaatcaaaatggatcat 245  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||    
T  30878825 catgactcaattgtttttcatgatccaatcaaaatagatcat 30878866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 67354 - 67167
Alignment:
Q  132 taatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagccaa 231  Q
    ||||||||| |||||| ||||| ||||||||| ||||| |||||||||| ||| | | ||| ||||  ||||||| |||||||| |||||||| ||||||    
T  67354 taatgtttttttatcaaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaat-ggatcataactcatttatttttcattagccaa 67256  T
Q  232 tcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaag 320  Q
    |||||||  ||||||| |||          ||||||||| ||||||||||||||||||||||||| |   |||||||||| ||||||||    
T  67255 tcaaaatttatcatgaaatggttttttttcctatatatacacaatttgtttttcattattttcatctacctcttcctcccttaaaaaag 67167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 316
Target Start/End: Complemental strand, 52654 - 52462
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||| | ||||| || |  ||| ||||||||||||  |||||    
T  52654 catctcatttaatgttttcttatcatccaattaaattgaattatgactcatttattttttattagccaatcaagat-ggaccatgactcatttagttttc 52556  T
Q  223 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaa 316  Q
    |  | ||||||||||| ||| |    ||||         || |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  52555 accaaccaatcaaaattgattacacaatgatttttgtctctgtatatagacaatttgtttttcattattttcatgtgtctcttccccccataaa 52462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 26657 - 26847
Alignment:
Q  117 attctccatcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttat-tttatatcaaccaataaaaagaggatcatgactcattt 215  Q
    ||||| |||| |||||||||||||||||||||||||||||| || |||||||| |||| || ||| ||| ||||||| || |  | | ||||||||||||    
T  26657 attcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactcattcatatttttattaaccaatcaagat-gaaccatgactcattt 26755  T
Q  216 gtttttcatgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
      ||||||| | |||||||||||||||||||   |||            |||||||||||||||||||||||||||||||||||| ||||||    
T  26756 agttttcatcaaccaatcaaaatggatcatgccttgattttttccctattatatagacaatttgtttttcattattttcatgtgtctcttcc 26847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 402
Target Start/End: Original strand, 26883 - 26947
Alignment:
Q  338 aagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||| || | |||||| || ||| |||||||| || ||||||||||||||||||||||||||    
T  26883 aagcatagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatcta 26947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 101102 - 101293
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||| ||| | |||| ||||||||||| ||| ||||| |||||||||| ||| | ||||| ||||  |||||||||||||||| |||||||| ||    
T  101102 catttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaat-ggatcatgactcatttatttttcataag 101200  T
Q  228 ccaatcaaaatggatcatgatatga-nnnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaa 319  Q
    ||||||||||| || ||| | ||||          |||||||||||||| ||||||| |||||||||||| |   |||| |||||||||||||    
T  101201 ccaatcaaaattgagcattacatgattttttttttctatatatagacaaattgttttacattattttcatctacctctttctcccataaaaaa 101293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 18252 - 18336
Alignment:
Q  318 aagtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    ||||||||| |||||||| |||||||| || | |||||| || ||| |||||||| || ||||||||||||||||||||||||||    
T  18252 aagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatcta 18336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 18179 - 18224
Alignment:
Q  262 ctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  18179 ctatatagagacaatttgtttatcattattttcatgtgtctcttcc 18224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 25444 - 25526
Alignment:
Q  320 gtattttctgtgttttgaaagcataaaattgtaatcactttgttctagattatgggattgattttcttttttatttgtatcta 402  Q
    |||||||  ||||||| |||||||| || | |||||| || ||| || |||||  | ||||||||||||||||||||||||||    
T  25444 gtattttacgtgttttaaaagcatagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatcta 25526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 22239 - 22068
Alignment:
Q  123 catcccatttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttc 222  Q
    |||| ||||||||| ||| | |||| |||||||||||  || ||||| |||||||||| |||    |||| |||| |  |||||||||||||| ||||||    
T  22239 catctcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaaataa-atcatgactcatttatttttc 22141  T
Q  223 atgagccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcat 296  Q
    || ||||||| ||||| |||||||| ||||         |||||||||||||| ||| ||||||||||||||||    
T  22140 attagccaattaaaattgatcatgacatga-ttttttccctatatatagacaacttgcttttcattattttcat 22068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 67302 - 67125
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||| ||| |||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  | ||||| |||||  ||||||  ||    
T  67302 catttaatgttttcttaccattcaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgatttatgacacatttagttttcaccag 67204  T
Q  228 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||| |||||||  |||          ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  67203 ccaatcaaaattgatcatgtcatg-tttttttccctatatatttacaatttgtttttcattattttcatatgtctcttcc 67125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 307
Target Start/End: Complemental strand, 75407 - 75230
Alignment:
Q  128 catttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgag 227  Q
    ||||||||||||||||| ||| |||||||| || |||||||| |||||||||| ||| | ||||| ||||  |  | ||||| |||||  ||||||  ||    
T  75407 catttaatgttttcttaccattcaatcaaattgaattatgactcatttattttttattagccaatcaaaa-tgatttatgacacatttagttttcaccag 75309  T
Q  228 ccaatcaaaatggatcatgatatgannnnnnnnnctatatatagacaatttgtttttcattattttcatgtgtttcttcc 307  Q
    ||||||||||| |||||||  |||          ||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  75308 ccaatcaaaattgatcatgtcatg-tttttttccctatatatttacaatttgtttttcattattttcatatgtctcttcc 75230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 32109 - 32036
Alignment:
Q  266 atatagacaatttgtttttcattattttcatgtgtttcttcctcccataaaaaagtattttctgtgttttgaaa 339  Q
    ||||||||||||| |||||||||| |||||| |   |||||||||||| |||| | ||||| ||||||||||||    
T  32109 atatagacaatttttttttcattactttcatctacatcttcctcccatgaaaatgcattttgtgtgttttgaaa 32036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 17139 - 17020
Alignment:
Q  129 atttaatgttttcttatcatccaatcaaaatggattatgacacatttattttatatcaaccaataaaaagaggatcatgactcatttgtttttcatgagc 228  Q
    |||||||||||| | |||| ||||||||||| |||  |||| |||||||||| ||| ||||||| |||| | |||||||||| |||| | ||| || ||     
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaata-gatcatgacttatttatattttattag- 17044  T
Q  229 caatcaaaatggatcatgatatga 252  Q
    |||||||||| |||||||| ||||    
T  17043 caatcaaaattgatcatgacatga 17020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University