View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17349_low_3 (Length: 461)
Name: NF17349_low_3
Description: NF17349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17349_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 44714691 - 44715135
Alignment:
| Q |
1 |
ccaattggatatacaacttgacccttgcagaatctatatgttcttagtgggtaccctattttgcttggtctcattgccatatttgtcatggccgagtttt |
100 |
Q |
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| T |
44714691 |
ccaaatggatatacaactggtcccttgtagaatctatatgttcttcctgggtaccctattttgcttggtctcattgccatatttgtcatggccaagtttt |
44714790 |
T |
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| Q |
101 |
ttaggtacccttgtgggtaccatgtcactggtagcttgcctcctgatagtaaaacacaatagtgtaataattgtattagtttataggctatttgcaattg |
200 |
Q |
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| T |
44714791 |
ttaggtactcttgtgggtaccatgtcactggtagcttgcctcctgatagtaaaacacaatagtgtaataattgtattagtttataggctatttgcaattg |
44714890 |
T |
|
| Q |
201 |
ggaattcattcaattttttcaagttttatgacaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacc |
300 |
Q |
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| T |
44714891 |
ggaattcattcaattttttcaagttttatgacaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacc |
44714990 |
T |
|
| Q |
301 |
cgcccacaatatgccagcaactttggggtcattctttgcaaaagtaatgtccacaggcccaccagacatcaaaaccaaaatagttggtccctttgatgca |
400 |
Q |
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| T |
44714991 |
cgcccacaatatgccagcaactttggggtcattctttgcaaaagtaatgtccacaggcccaccagacatcaaaaccaaaatagttggtccctttgatgca |
44715090 |
T |
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| Q |
401 |
gctgccacctttgaaacaagatcttgttgatgtccaggcaaaagc |
445 |
Q |
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| T |
44715091 |
gctgccacctttgaaacaagatcttgttgatgtccaggcaaaagc |
44715135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 231 - 438
Target Start/End: Complemental strand, 39090498 - 39090291
Alignment:
| Q |
231 |
acaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtc |
330 |
Q |
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| T |
39090498 |
acaaacctgggttagtggttccaaacaatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaaaatgcccataattcgaggatc |
39090399 |
T |
|
| Q |
331 |
attctttgcaaaagtaatgtccacaggcccaccagacatcaaaaccaaaatagttggtccctttgatgcagctgccacctttgaaacaagatcttgttga |
430 |
Q |
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| T |
39090398 |
attctttgcaaaagttatatctataggcccaccagacattaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttga |
39090299 |
T |
|
| Q |
431 |
tgtccagg |
438 |
Q |
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|||||||| |
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| T |
39090298 |
tgtccagg |
39090291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 39091018 - 39090935
Alignment:
| Q |
63 |
gcttggtctcattgccatatttgtcatggccgagttttttaggtacccttgtgggtaccatgtcactggtagcttgcctcctga |
146 |
Q |
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| T |
39091018 |
gcttggtctcattgccatatttgtcattgccaagtttttgaggtaaccttgtgggtaccatgtcataggtagcttagctcctga |
39090935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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