View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17349_low_5 (Length: 287)

Name: NF17349_low_5
Description: NF17349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17349_low_5
NF17349_low_5
[»] chr1 (11 HSPs)
chr1 (1-272)||(1857175-1857446)
chr1 (1-272)||(1868773-1869044)
chr1 (1-272)||(1815598-1815869)
chr1 (1-272)||(1843164-1843435)
chr1 (190-268)||(9218518-9218596)
chr1 (16-268)||(9229229-9229481)
chr1 (1-268)||(9161420-9161687)
chr1 (193-257)||(9155700-9155764)
chr1 (190-268)||(9118765-9118843)
chr1 (190-268)||(9170435-9170513)
chr1 (190-268)||(9200002-9200080)
[»] chr3 (2 HSPs)
chr3 (193-239)||(40573363-40573409)
chr3 (193-239)||(40579820-40579866)
[»] chr7 (1 HSPs)
chr7 (190-227)||(20550044-20550081)
[»] chr2 (1 HSPs)
chr2 (190-239)||(11845474-11845523)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1857446 - 1857175
Alignment:
Q  1 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  1857446 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttt 1857347  T
Q  101 tcaaacaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctccctcgtcagcaactccacgagaactactcc 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  1857346 tcaagcaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctcccccgtcagcaactccacaagaactactcc 1857247  T
Q  201 aaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagt 272  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1857246 aaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagt 1857175  T

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Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1869044 - 1868773
Alignment:
Q  1 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  1869044 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttt 1868945  T
Q  101 tcaaacaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctccctcgtcagcaactccacgagaactactcc 200  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||    
T  1868944 tcaatcaagatagtaaatgcattgcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctcccccgtcagcaactctacaagaactactcc 1868845  T
Q  201 aaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagt 272  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1868844 aaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagt 1868773  T

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Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1815598 - 1815869
Alignment:
Q  1 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttt 100  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  1815598 ctcaaacagttcgccgcaagaacagccacctccatgatcacttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttt 1815697  T
Q  101 tcaaacaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctccctcgtcagcaactccacgagaactactcc 200  Q
    |||| ||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||    
T  1815698 tcaagcaagataaaaagtgcgtagcaagacttcttctctcttccggcctaccaaaacaaaaaggtttctcccccgttagcagctccacaagaactactcc 1815797  T
Q  201 aaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1815798 aaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagt 1815869  T

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Target: chr1; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1843435 - 1843164
Alignment:
Q  1 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  1843435 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttt 1843336  T
Q  101 tcaaacaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctccctcgtcagcaactccacgagaactactcc 200  Q
    |||| |||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||    
T  1843335 tcaatcaagatagtaaattcattgcaagacttcttctctcttccggcctaccaaaacaaaaaggtttctcccccgttagcaactctacaagaactactcc 1843236  T
Q  201 aaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagt 272  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1843235 aaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagt 1843164  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 9218518 - 9218596
Alignment:
Q  190 agaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaa 268  Q
    |||||||||||||||||||| ||||||||||| || ||||||||   ||||||||||||||||||||| ||||| ||||    
T  9218518 agaactactccaaagctatacacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaa 9218596  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 9229229 - 9229481
Alignment:
Q  16 gcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttttcaaacaagatagaa 115  Q
    ||||||| ||| || ||||| ||||| |  ||||| || |||||| | | |||| |||||| ||||||| |||||| ||| | | | ||||||||||  |    
T  9229229 gcaagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacatgattctctcttaaacaagataaga 9229328  T
Q  116 aatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctccctcgtcagcaactccacgagaactactccaaagctatatacatc 215  Q
    | || || ||||| |||||  ||||||| || |||  |||| ||| ||||||||||| ||| || | |||  | || ||||| || |||||||| |||||    
T  9229329 agtgaattgcaaggcttctgttttcttctggtctattaaaagaaataggtttctcccccgttaggagctctgccagtactaccccgaagctataaacatc 9229428  T
Q  216 acttttctcagttaattggcttgtttgcatatactctggatccaagtagccaa 268  Q
    ||||||||| |||| ||||  |||||||||||| |||||||| || |||||||    
T  9229429 acttttctctgttagttggtgtgtttgcatatattctggatctaaatagccaa 9229481  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 9161420 - 9161687
Alignment:
Q  1 ctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattattgtttt 100  Q
    ||||||||| | || ||||||| ||| |||||||| ||||| |  |||||||| |||||  | | |||| |||||||| ||||||| |   |||  | ||    
T  9161420 ctcaaacaccttgctgcaagaatagcaacctccttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgtt 9161519  T
Q  101 tcaaacaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctccctcgtcagcaactccacgagaactactcc 200  Q
    | |||||||| | ||| ||||||||||||||  |  | ||||| ||||||  |||| ||| |||||| || | ||| || | |||  | |||||||| ||    
T  9161520 ttaaacaagacaaaaagtgcatagcaagactgatattctcttctggcctattaaaagaaagaggtttgtctcccgtaagaagctctgcaagaactacacc 9161619  T
Q  201 aaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaa 268  Q
    ||||||||| |||||||||||||| |||| |||   ||||||||||||||| ||||| ||||| ||||    
T  9161620 aaagctataaacatcacttttctctgttagttgatgtgtttgcatatactccggatctaagtaaccaa 9161687  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 9155700 - 9155764
Alignment:
Q  193 actactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatc 257  Q
    ||||||||||||||||| |||||||||||||| ||||||||    ||||||||||||||||||||    
T  9155700 actactccaaagctatagacatcacttttctcggttaattgatgagtttgcatatactctggatc 9155764  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 9118843 - 9118765
Alignment:
Q  190 agaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaa 268  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    |||||||| |||||||| || ||||| ||||    
T  9118843 agaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaa 9118765  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 9170435 - 9170513
Alignment:
Q  190 agaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaa 268  Q
    |||||||||||||||||||| ||||||||||| || |||||||    ||||||||||||||| ||||| ||||| ||||    
T  9170435 agaactactccaaagctataaacatcacttttttcggttaatttatgtgtttgcatatactcgggatctaagtatccaa 9170513  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 9200002 - 9200080
Alignment:
Q  190 agaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaa 268  Q
    ||||| |||||||||||||| |||||||||||||| |||| |||   ||||||||||||||| ||||| ||||| ||||    
T  9200002 agaaccactccaaagctataaacatcacttttctcggttagttgatgtgtttgcatatactcgggatctaagtatccaa 9200080  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 40573409 - 40573363
Alignment:
Q  193 actactccaaagctatatacatcacttttctcagttaattggcttgt 239  Q
    ||||||||||| ||||| |||||||| ||||| ||||||||||||||    
T  40573409 actactccaaatctataaacatcactcttctctgttaattggcttgt 40573363  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 40579866 - 40579820
Alignment:
Q  193 actactccaaagctatatacatcacttttctcagttaattggcttgt 239  Q
    ||||||||||| ||||| |||||||| ||||| ||||||||||||||    
T  40579866 actactccaaatctataaacatcactcttctctgttaattggcttgt 40579820  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 20550044 - 20550081
Alignment:
Q  190 agaactactccaaagctatatacatcacttttctcagt 227  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  20550044 agaacaactccaaaactatatacatcacttttctcagt 20550081  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 11845523 - 11845474
Alignment:
Q  190 agaactactccaaagctatatacatcacttttctcagttaattggcttgt 239  Q
    ||||||||||| |||||| |||||||||||||||| || ||||| |||||    
T  11845523 agaactactccgaagctaaatacatcacttttctcggtaaattgacttgt 11845474  T

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