View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17349_low_6 (Length: 281)
Name: NF17349_low_6
Description: NF17349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17349_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 42205657 - 42205379
Alignment:
| Q |
1 |
ttcatcaaacaagcaaattacacatgaattcagtgtgaagtggatatcatcgtgttacaaattcacctaattaaggttttattatctatttatttacaca |
100 |
Q |
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| T |
42205657 |
ttcatcaaacaagcaaattacacatgaattcagtgtgaaatggatatcatcgtgttacaaattcacctaattaaggttttattatctatttattcacaca |
42205558 |
T |
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| Q |
101 |
tatttctgattgatcacatatcatatcctatcttatatgtgatactttttgtacttaaaacttggtaccaaataaaattcctcttaagatcttaggcaaa |
200 |
Q |
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| T |
42205557 |
tatttctgattgatcacatatcatatcctatcttatatgtgatactttttgtacttaaaacttggtaccaaataaaattcctcttaagatcttaggcaaa |
42205458 |
T |
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| Q |
201 |
acaaaataattcacaaattgatgatcaattctcagtagatttgcgtaagatgagctcaccgagctaataacatattcat |
279 |
Q |
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| T |
42205457 |
acaaaataattcacaaattgatgatcaattctcagtagatttgcgtaagatgagctcaccgagctaataacatattcat |
42205379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 42212848 - 42212566
Alignment:
| Q |
1 |
ttcatcaaacaagcaaattacacatgaatt-cagtgtgaagtggatatca-------tcgtgttacaaattcacctaattaaggttttattatctattta |
92 |
Q |
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| T |
42212848 |
ttcatcaaacaagcaaattacacatgaattgcagtgtgaaatggataacaattaacatcatgttacaaattcacctatg---gtttttactatctattta |
42212752 |
T |
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| Q |
93 |
tttacacatatttctgattgatcacatatcatatcctatcttatatgtgatactttttgtacttaaaacttggtaccaa---ataaaattcctcttaaga |
189 |
Q |
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| T |
42212751 |
ttcacacatattt---attgatta--tgtcatatcctatcttatatgtgatgctttttgtacttaaaactaggtaccaataaatagaattcgtcgtatga |
42212657 |
T |
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| Q |
190 |
tcttaggcaaaacaaaataattcacaaattgatgatcaattctcagtagatttgcgta---agatgagctcaccgagctaataacatattcat |
279 |
Q |
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| || |||||||||| |||||||||||||||||||||| |||||||||| ||| || |||||| || |||||||||||||||||||||| |
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| T |
42212656 |
ttctac-caaaacaaaa-aattcacaaattgatgatcaatactcagtagatctgcataattagatgaacttaccgagctaataacatattcat |
42212566 |
T |
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