View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17349_low_8 (Length: 270)
Name: NF17349_low_8
Description: NF17349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17349_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 35550695 - 35550947
Alignment:
| Q |
1 |
atttgtttaatttggtgttccgacctgggtgcaccaaaacaagaatttaacatgatccataatgcaatagttgttctcatccctaagccgaaacatcaaa |
100 |
Q |
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| T |
35550695 |
atttgtttaatttgatgttccgacctgggtgcaccaaaacaagaatttaacatgatccataatgaaatagttgttctcatccctaggtcggaacaccgaa |
35550794 |
T |
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| Q |
101 |
ttattgtcagcctttcaaatggtccacacacatgcaagccatatctcccatagataaattataactttcccacccttgcacttttgttagaattttacta |
200 |
Q |
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| T |
35550795 |
ttattgtctgcctttcaaatggtccacacacatgcaagccatatctcccatagataaattataactttcccacccttacacttttgttagaattttatta |
35550894 |
T |
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| Q |
201 |
atgatgacaaggttccaaaaagctatcctctcctgatatttccatcaatatat |
253 |
Q |
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| T |
35550895 |
atgatgacaaggttccgaaaagctatcctctcctgatatttccatcaatatat |
35550947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 35556052 - 35556153
Alignment:
| Q |
149 |
catagataaattataactttcccacccttgcacttttgttagaattttactaatgatgacaaggttccaaaaagctatcctctcctgatatttccatcaa |
248 |
Q |
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|||| ||||||| | || || |||||||| || ||||| |||||||||| |||| | | ||||||||||||||||||||||||||||||||||||| | |
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| T |
35556052 |
catatataaattttgacctttccacccttacaattttgctagaattttattaataa---ctaggttccaaaaagctatcctctcctgatatttccatcca |
35556148 |
T |
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| Q |
249 |
tatat |
253 |
Q |
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| T |
35556149 |
tatat |
35556153 |
T |
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