View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1734_high_1 (Length: 696)
Name: NF1734_high_1
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 19 - 691
Target Start/End: Original strand, 15050961 - 15051633
Alignment:
| Q |
19 |
atttgtggcgacccacttactcttttggttcttgtgctgaaaacaaagtacaacctgttaaagcttctgttgaaactgccccatttcccttgtttcagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15050961 |
atttgtggcgacccacttactcttttggttcttgtgctgaaaacaaagtacaacctgttaaagcttctgtcgaaactgccccatttcccttgtttcagcc |
15051060 |
T |
|
| Q |
119 |
tcttaaagatgaagaaacagcttctcaggtaaaaacccattttgcaccttgtttgtttatttataggttgaaagtaacaactaggactaaggaatgttaa |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051061 |
tcctaaagatgaagaaacagcttctcaggtaaaaacccattttgcaccttgtttgtttatttataggttgaaagtaacaactaggactaaggaatgttaa |
15051160 |
T |
|
| Q |
219 |
attagtttatatatgcaaaagaatgttaccttttttgggtgcatatgagacctttttgttggtgggcataaagggagtgttttagtagtcttacccttaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051161 |
attagtttatatatgcaaaagaatgttaccttttttgggtgcatatgagacctttttgttggtgggcataaagggagtgttttagtagtcttacccttaa |
15051260 |
T |
|
| Q |
319 |
gccggccctgaaatgtgttaaaacaacagttcggtttaagaaaataaagatacaaaaaatgcaaaaatggaacatgatgtttggtaacaaagttcggtca |
418 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051261 |
gccggccctggaatgtgttaaaacaacagctcggtttaagaaaataaagatacgaaaaatgcaaaaatggaacatgatgtttggtaacaaagttcggtca |
15051360 |
T |
|
| Q |
419 |
attgtgcctacgtctacggaaagaagagcggctgcgattcctttctgtgagtttagagtatacaacttgtactcaaagactacggtccagattataatgt |
518 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051361 |
attgtgcctatgtctacataaagaagagcggctgcgattcctttctgtgagtttagagtatacaacttgtactcaaagactacggtccagattataatgt |
15051460 |
T |
|
| Q |
519 |
taccccagttgctcttgtttcgctcgagcaacctattcacttatcattaactatgagttatgcccaacaggttgattgagttgagtgagtgaatgttgtt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051461 |
taccccagttgctcttgtttcgctcgagcaacctattcacttatcattaactatgagttatgcccaacaggttgattgagttgagtgagtgaatgttgtt |
15051560 |
T |
|
| Q |
619 |
tccaaggttttgaataaaggttcttaattgatattgcaactgcaatgtgaaagttttagagacctttgctact |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15051561 |
tccaaggttttgaataaaggttcttaattgatattgcaactgcaatgtgaaagttttagagacctttgttact |
15051633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 429
Target Start/End: Original strand, 23856378 - 23856409
Alignment:
| Q |
398 |
tttggtaacaaagttcggtcaattgtgcctac |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23856378 |
tttggtaacaaagttcggtcaattgtgcctac |
23856409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 30946628 - 30946664
Alignment:
| Q |
397 |
gtttggtaacaaagttcggtcaattgtgcctacgtct |
433 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
30946628 |
gtttggtaacaaagttcggtctattctgcctacgtct |
30946664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University