View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_11 (Length: 460)
Name: NF1734_high_11
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 147 - 448
Target Start/End: Original strand, 27819120 - 27819423
Alignment:
| Q |
147 |
tgcacaaacaaaatcagaacaagaatttccaatatatattaacttgcta--ataggtttaaatccctaatcaacttggtggtttatgttttcattgatca |
244 |
Q |
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| T |
27819120 |
tgcacaaacaaaatcagaacaagaatttccaatatatattaacttgctataataggtttaaatccctaatcaacttggtggtttaggttttcattgatca |
27819219 |
T |
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| Q |
245 |
ttgctaataggtttaaatccttaattaataagctatcaaggaatttaattcaaaatcattttggagcgagtcattcctctgcctgtgatgtgtatgacaa |
344 |
Q |
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| T |
27819220 |
ttgctaataggtttaaatccttaattaataagctatcaaggaatttaattcaaaatcattttggagcgagtcattcctctgcctgtgatgtgtatgacaa |
27819319 |
T |
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| Q |
345 |
atgagtcgtgaattattttctcaaaagagaaagtatgatttcaattgaaagtcatctttaacttttgtgaacttttaattgttagtgccatgcataacac |
444 |
Q |
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| T |
27819320 |
atgagtcgtgaattattttctcaaaagagaaagtatgatttcaattgaaagtcatatttaacttttgtgaacttttaattgttagtgtcatgcataacac |
27819419 |
T |
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| Q |
445 |
atca |
448 |
Q |
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|||| |
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| T |
27819420 |
atca |
27819423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 27818945 - 27819087
Alignment:
| Q |
1 |
ctaagagagaaagaaattttggttggaacaaccttcaaagtgctgccataaataccaacctgcaccactggtaacatgaaggtttatgttataaaaaatt |
100 |
Q |
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| T |
27818945 |
ctaagagagaaagaaattttggatggaacaaccttcaaagtgctgccataaataccaacctgcaccactggtaacatgaaggtttatgttataaaaaatt |
27819044 |
T |
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| Q |
101 |
agattatgtagaaatatcattatccag-aaagaaataaataag |
142 |
Q |
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| T |
27819045 |
agattctgtagaaatatcattatccagtatagaaataaataag |
27819087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 36765889 - 36765952
Alignment:
| Q |
256 |
tttaaatccttaattaataagctatcaaggaatttaattcaaaatcattttggagcgagtcattc |
320 |
Q |
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| T |
36765889 |
tttaaatcctttattaataaactattgaggaatttaatt-aaaatcatcttggagtgagtaattc |
36765952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 11970480 - 11970561
Alignment:
| Q |
40 |
gtgctgccataaataccaacctgcaccactggtaacatgaaggt--ttatgttataaaaaattagattatgtagaaatatca |
119 |
Q |
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| T |
11970480 |
gtgctgccatgaacaccaaactgcaccactggtaacatgagggttatcatgttattaaaaattagattctatagcaatatca |
11970561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 11981248 - 11981286
Alignment:
| Q |
152 |
aaacaaaatcagaacaagaatttccaatatatattaact |
190 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |
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| T |
11981248 |
aaactaaatcagaacaagaaattccaatatatattaact |
11981286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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