View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_15 (Length: 445)
Name: NF1734_high_15
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 257 - 438
Target Start/End: Original strand, 38403947 - 38404135
Alignment:
| Q |
257 |
gtttttcatgacaaaaagtaaaggtaatatatgttgattgttcagactcttttatgcgtaacaaaatcaaatataatttgttgaaataacaatacttaag |
356 |
Q |
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| T |
38403947 |
gtttttgatgacaaaaagtaaaggtaatatatgttgattgttcagactcttttatgcgtaacaaaatcaaatataatttgttgaaataacaatacttaag |
38404046 |
T |
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| Q |
357 |
ttaaacaaagaagagagaaatacgagtgagtttggaagaa-------taaggagatgccatgagtgaattgcattaaatagaataatct |
438 |
Q |
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| T |
38404047 |
ttaaacaaagaagagggaaatacgagtgagtttggaagaataaggattaaggagatgccatgagtgaattgcattaaatagaataatct |
38404135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38403691 - 38403806
Alignment:
| Q |
1 |
gctccaagcccagaaaacagggaaatcatgatgtgtaattaaagagggatatttagcaatacaaggtcgtgaattgttcgggattagtttgtttgctaca |
100 |
Q |
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| T |
38403691 |
gctccaagcccggaaaacagggaaatcatgatgtgtaattaaagagg-atatttagcaatacaaggtcgtgaattgttcgggattagtttgtttgctaca |
38403789 |
T |
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| Q |
101 |
acaagcattttcttatt |
117 |
Q |
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| T |
38403790 |
acaagcattttcttatt |
38403806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 30028052 - 30027978
Alignment:
| Q |
2 |
ctccaagcccagaaaaca-gggaaatcatgatgtgtaattaaagagggatatttagcaatacaaggtcgtgaatt |
75 |
Q |
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| T |
30028052 |
ctccaagcccagaaaacaagggaaaacatgaggtgtaatcaaagaaggatatttagcaatacaaggtcgtgaatt |
30027978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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