View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_16 (Length: 442)
Name: NF1734_high_16
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 52035211 - 52034802
Alignment:
| Q |
1 |
ctacaactgaaaacactttcaaatgtatgacctaatgtgatttcaaaatgagtgtaagtagtggacaaatctaagacgagactcacaagtcctcgttgaa |
100 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
52035211 |
ctacaactgaaaacactttcaagtgtaggacctaatgtgattttaaaatgagtgtaagtagtggacaaatctaagatgaaactcacaagtcctcgttgaa |
52035112 |
T |
|
| Q |
101 |
cagcaacaggaacaaatcgattgatatctttataatggcatccagtgcatttgatgcgaaatgatcggatgggcaaggcg------------agcatgac |
188 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52035111 |
cagcaacaggaacaaatcgattgatatcttta-aatggcatccagtgcatttgatgcgaaatgatcggatgggcaaggcggggtcacgcaggagcatgac |
52035013 |
T |
|
| Q |
189 |
ggagttgacaaattcaaactaatattgtaggacttttatcgctcaagacattgcctttcacaccaggggaagttgatgcagttttctcagacttccttca |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52035012 |
ggagttgacaaattcaaactaatattgtaggacttttatcgctcaagacattgcctttcacgccaggggaagttgatgcagttttctcagacttccttca |
52034913 |
T |
|
| Q |
289 |
aaacattgaggacatggatgaattgggaggatgtcatccgtgtgatcaatttctgcataattataactttcaaaaactataatccttagctaggaaaaaa |
388 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034912 |
aaacattgaggaaatggatgaattgggaggatgtcatccgtgtgatcaatttctgcataattataactttcaaaaactataatccttagctaggaaaaaa |
52034813 |
T |
|
| Q |
389 |
tccatcttctc |
399 |
Q |
| |
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||||||||||| |
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| T |
52034812 |
tccatcttctc |
52034802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 12483684 - 12483623
Alignment:
| Q |
67 |
aaatctaagacgagactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatc |
128 |
Q |
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| T |
12483684 |
aaatctaagatgagattctcaattccttttttgacagcaacaggaacaaatcgattgatatc |
12483623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 12486006 - 12485945
Alignment:
| Q |
67 |
aaatctaagacgagactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatc |
128 |
Q |
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|||||||||| |||| || ||| |||| || ||||||||||||||||||||||||||||| |
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| T |
12486006 |
aaatctaagatgagattctcaattccttttttgacagcaacaggaacaaatcgattgatatc |
12485945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 12505114 - 12505053
Alignment:
| Q |
67 |
aaatctaagacgagactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatc |
128 |
Q |
| |
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|||||||||| |||| || ||| |||| || ||||||||||||||||||||||||||||| |
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| T |
12505114 |
aaatctaagatgagattctcaattccttttttgacagcaacaggaacaaatcgattgatatc |
12505053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 12507438 - 12507377
Alignment:
| Q |
67 |
aaatctaagacgagactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatc |
128 |
Q |
| |
|
|||||||||| |||| || ||| |||| || ||||||||||||||||||||||||||||| |
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| T |
12507438 |
aaatctaagatgagattctcaattccttttttgacagcaacaggaacaaatcgattgatatc |
12507377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 12658324 - 12658263
Alignment:
| Q |
67 |
aaatctaagacgagactcacaagtcctcgttgaacagcaacaggaacaaatcgattgatatc |
128 |
Q |
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|||||||||| |||| || ||| |||| || ||||||||||||||||||||||||||||| |
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| T |
12658324 |
aaatctaagatgagattctcaattccttttttgacagcaacaggaacaaatcgattgatatc |
12658263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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