View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_high_25 (Length: 373)

Name: NF1734_high_25
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_high_25
NF1734_high_25
[»] chr6 (11 HSPs)
chr6 (1-298)||(4261299-4261610)
chr6 (60-256)||(4037729-4037940)
chr6 (294-360)||(4261638-4261698)
chr6 (163-204)||(4027475-4027516)
chr6 (70-135)||(4027537-4027602)
chr6 (258-298)||(4268392-4268432)
chr6 (83-125)||(4268221-4268263)
chr6 (256-298)||(4276819-4276861)
chr6 (163-202)||(4268308-4268347)
chr6 (263-296)||(4263019-4263052)
chr6 (258-298)||(4037673-4037713)
[»] chr5 (5 HSPs)
chr5 (1-124)||(24052702-24052825)
chr5 (1-124)||(24049566-24049689)
chr5 (168-259)||(24101913-24102009)
chr5 (258-298)||(24091661-24091701)
chr5 (188-216)||(24091725-24091753)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4261299 - 4261610
Alignment:
Q  1 atcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattcttctt 100  Q
    ||||| |||||||||||   ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4261299 atcagcagtaaatgagaacagttgaatgagtcaatctgcacaaatgaccaaataaaaaagcatatgatcttttatgatctactcttattctattcttctt 4261398  T
Q  101 tgtcatttggtccaaggcatcaaaaaagatgttaagacaatactttatatctgttattagtaaaa--------------acaacaagaatggcctaaacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||    
T  4261399 tgtcatttggtccaaggcatcaaaaaagatgttaagacaatactttatatctgttattagtaaaaacaactaagtaaagacaacaagaatggcctaaacc 4261498  T
Q  187 tatgggctattagcaggaaatagactgcttaactagctacagttcatgtttggtttatactttgtataaactaaacttgttggcactttatagatttatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  4261499 tatgggctattagcaggaaatagactgcttaactagctacatttcatgtttggtttacacttggtataaactaaacttgttggcactttatagatttatt 4261598  T
Q  287 ctagggaaaaga 298  Q
    ||||||||||||    
T  4261599 ctagggaaaaga 4261610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 60 - 256
Target Start/End: Complemental strand, 4037940 - 4037729
Alignment:
Q  60 gcatatgatcttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaagaca--atactttatatctgttat 157  Q
    ||||||||||||||||||||||||| ||||||||| ||  |||| |||| ||| |||| | ||||  |||||||||||||  ||||| ||||||||||||    
T  4037940 gcatatgatcttttatgatctactcatattctattattgcttgttattttgtcaaaggtaccaaaggagatgttaagacacaatactatatatctgttat 4037841  T
Q  158 tagtaaa------------aacaacaagaatggcctaaa-cctatgggctattagcaggaaatagactgcttaactagctacagttcatgtttggtttat 244  Q
    | |||||            |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| || ||| || ||||| || |    
T  4037840 tggtaaagacaacaagtaaaacaacaagaatggcctaaaacctatgggctattggcaggaactagactgcttaactagcaacggttgatatttggatttt 4037741  T
Q  245 actttgtataaa 256  Q
    || |||||||||    
T  4037740 accttgtataaa 4037729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 4261638 - 4261698
Alignment:
Q  294 aaagattcttgctactgctgctcatattcacataaacctagagaagaatacatccattgtatacatt 360  Q
    ||||||||||||||||||   ||||||||||||||||||||   |||||||||||||||||||||||    
T  4261638 aaagattcttgctactgc---tcatattcacataaacctag---agaatacatccattgtatacatt 4261698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 4027516 - 4027475
Alignment:
Q  163 aaaacaacaagaatggcctaaacctatgggctattagcagga 204  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  4027516 aaaacaacaaaaatggcctaaacctatgggctattagcagga 4027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 4027602 - 4027537
Alignment:
Q  70 ttttatgatctactcttattctattcttctttgtcatttggtccaaggcatcaaaaaagatgttaa 135  Q
    |||||||| |||||||||||||||| || | |||||||| |||||||||||||||  |||||||||    
T  4027602 ttttatgaactactcttattctatttttgtctgtcattttgtccaaggcatcaaagtagatgttaa 4027537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 4268392 - 4268432
Alignment:
Q  258 taaacttgttggcactttatagatttattctagggaaaaga 298  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  4268392 taaacttgttggcactttatagatttattttagggaaaaga 4268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 4268221 - 4268263
Alignment:
Q  83 tcttattctattcttctttgtcatttggtccaaggcatcaaaa 125  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  4268221 tcttattctattcttgtttgtcatttgatccaaggcatcaaaa 4268263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 4276819 - 4276861
Alignment:
Q  256 actaaacttgttggcactttatagatttattctagggaaaaga 298  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  4276819 actaaacttgttggcactttatacatttattctagggtaaaga 4276861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 4268308 - 4268347
Alignment:
Q  163 aaaacaacaagaatggcctaaacctatgggctattagcag 202  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  4268308 aaaacaacaagaatggcttaaaactatgggctattagcag 4268347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 4263019 - 4263052
Alignment:
Q  263 ttgttggcactttatagatttattctagggaaaa 296  Q
    |||||||||||||||||||||| |||||||||||    
T  4263019 ttgttggcactttatagatttactctagggaaaa 4263052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 4037713 - 4037673
Alignment:
Q  258 taaacttgttggcactttatagatttattctagggaaaaga 298  Q
    |||||||||||||||||| |||||||| ||| |||||||||    
T  4037713 taaacttgttggcactttgtagatttactcttgggaaaaga 4037673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 24052825 - 24052702
Alignment:
Q  1 atcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattcttctt 100  Q
    |||||||||||||||||  |||||||||||||| |||  |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||| ||    
T  24052825 atcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatcttgtt 24052726  T
Q  101 tgtcatttggtccaaggcatcaaa 124  Q
    || |||||||||||||||||||||    
T  24052725 tgacatttggtccaaggcatcaaa 24052702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 24049689 - 24049566
Alignment:
Q  1 atcagaagtaaatgagattggttgaatgagtcaatctgcacaaactagcaaataaaaaagcatatgatcttttatgatctactcttattctattcttctt 100  Q
    |||||||||||||||||  |||||||||||||| |||  |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||| ||    
T  24049689 atcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttattctaatcttgtt 24049590  T
Q  101 tgtcatttggtccaaggcatcaaa 124  Q
    ||  ||||||||||||||||||||    
T  24049589 tgatatttggtccaaggcatcaaa 24049566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 24102009 - 24101913
Alignment:
Q  168 aacaagaatggcctaaa-cctatgggctat----tagcaggaaatagactgcttaactagctacagttcatgtttggtttatactttgtataaacta 259  Q
    ||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  24102009 aacaagaatggcctaaaacctatgggctatatattagcaggaaatagactgcttaactagctacagttcatgtttggattataccttgtataaacta 24101913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 24091701 - 24091661
Alignment:
Q  258 taaacttgttggcactttatagatttattctagggaaaaga 298  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  24091701 taaacttgttggcactttatatatttattatagggaaaaga 24091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 24091753 - 24091725
Alignment:
Q  188 atgggctattagcaggaaatagactgctt 216  Q
    |||||||||||||||||||||||||||||    
T  24091753 atgggctattagcaggaaatagactgctt 24091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University