View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_27 (Length: 367)
Name: NF1734_high_27
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 64 - 348
Target Start/End: Original strand, 34550634 - 34550917
Alignment:
| Q |
64 |
gatataatttggcaatgaattccacccatattaattagatattacctcattacactaaaaacacatgttagctaattttattttatttttgaaacaatgt |
163 |
Q |
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| T |
34550634 |
gatataatttggcaatgaattccacccatattaattagatattacctcattacactaaaaacacatgttagctaatttttttttttttttgaaacaatgt |
34550733 |
T |
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| Q |
164 |
tagctaacttataagcacagttgttctcttcctaaaataaaaacttctagtaacgtgaacaattagctcaccaattttacaacctccaagaaattagtaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |
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| T |
34550734 |
tagctaacttataagcacagttgttctcttcctaaaataaaaacttctagtaacgtgaacaattagctcaccaattttaccaccaccaaggaattagtaa |
34550833 |
T |
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| Q |
264 |
atgattagaaaaaacttgaactgttacatttgaacgattatatatgtataagtgcttaggtttacaagaaaaaccacccatgagg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
34550834 |
atgattagaaaaaacttgaactgttacatttgaacgataatatatgtataagtgcttagg-ttacaagagaaaccacccatgagg |
34550917 |
T |
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