View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_3 (Length: 571)
Name: NF1734_high_3
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 34014956 - 34014419
Alignment:
| Q |
20 |
atgacctaagtaagtccatattaattattacgtaccttgatgtttccaattagcatagtgactagaaggaggccactggttaatataatagtgttgaaaa |
119 |
Q |
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| T |
34014956 |
atgacctaagtaagtccatattaattattacgtaccttgatgtttccaattagcatagtgactagaaggaggccactggttaatataatagtgttgaaaa |
34014857 |
T |
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| Q |
120 |
cgacttccatcctttccgttgtactctggaggttcccaaaagtgctgaccacatcaacaaaaaacttttgtgacaatgagatatataaagtgcatatgaa |
219 |
Q |
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| T |
34014856 |
cgacttccatcctttccgttgtactctggaggttcccaaaagtgctgaccacatcaacaaaaaacttttgtgacaatgagatatataatgtgcatatgaa |
34014757 |
T |
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| Q |
220 |
gcatccttaactacaacaacggtaccaataatgcatgaatcacgtacatggtattttgttactattcaattcaatatgtcatcatgaattgtccacattt |
319 |
Q |
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| T |
34014756 |
gcatccttaactacaacaacggtaccaataatgcatgaatcacgtacatggtattttgttactattcaattcaatatgtcatcatgaattgtccacattt |
34014657 |
T |
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| Q |
320 |
taccgtaatataaaggtttgcagcgtaaccatagtcattagtcatcatcgcaactacaatttaaaatcatgaagtgtacaatgtgatgagaaaatacctg |
419 |
Q |
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| T |
34014656 |
taccataatataaaggtttgcagcgtaaccatagtcattagtcatcatcgcaactacaatttaaaatcatgaaatgtacaatgtgatgagaaaatacctg |
34014557 |
T |
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| Q |
420 |
agagtcattaggccccaaaagataggaaggagtatcttttcaattcgactattatttgtaacaagttgaacactccattcataaactccaaattcatagt |
519 |
Q |
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| T |
34014556 |
agagtcattaggccccaaaagataggaaggagtatcttttcaattcgactattatttgtaacaagttgaacactccattcataaactccaaattcatagt |
34014457 |
T |
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| Q |
520 |
tatcagcactagctaaacatgtagaccttgcttctgtg |
557 |
Q |
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| T |
34014456 |
tatcagcactagctaaacatgtagaccttgcttctgtg |
34014419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 22847837 - 22847724
Alignment:
| Q |
52 |
taccttgatgtttccaattagcatagtgactagaaggaggccactggttaatataatagtgttgaaaacgacttccatcctttccgttgtactctggagg |
151 |
Q |
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||||||||||||||| || | ||||||||||||||| || ||||| || || || || |||||||||| ||||| | || |||||||| |||| |||| |
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| T |
22847837 |
taccttgatgtttccgatcaacatagtgactagaagaagtccactagtcaagattatgatgttgaaaactacttctagccaatccgttgtgctctcgagg |
22847738 |
T |
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| Q |
152 |
ttcccaaaagtgct |
165 |
Q |
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| T |
22847737 |
tttccaaaagtgct |
22847724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 10164103 - 10164137
Alignment:
| Q |
316 |
attttaccgtaatataaaggtttgcagcgtaacca |
350 |
Q |
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| T |
10164103 |
attttaccgcaatataaaggtttgcagcgtaacca |
10164137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 26331705 - 26331745
Alignment:
| Q |
312 |
ccacattttaccgtaatataaaggtttgcagcgtaaccata |
352 |
Q |
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| T |
26331705 |
ccacattttaccgcaatataaaggttcgcagtgtaaccata |
26331745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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