View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_high_37 (Length: 321)

Name: NF1734_high_37
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_high_37
NF1734_high_37
[»] chr1 (8 HSPs)
chr1 (16-308)||(1840210-1840502)
chr1 (118-294)||(1832524-1832697)
chr1 (104-282)||(1866231-1866409)
chr1 (117-191)||(9164081-9164155)
chr1 (120-191)||(9157966-9158037)
chr1 (124-198)||(9175916-9175990)
chr1 (124-198)||(9202945-9203019)
chr1 (120-189)||(9220418-9220487)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 1840210 - 1840502
Alignment:
Q  16 gttatgacagttacggttattttaatagttacgatgatgaaaacgagcattcaacaacagggtgcttagcaagcgttattggtcatgaaagattgattaa 115  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1840210 gttatgacagttacggttattttaatagttacgatggtgaaaacgagcattcaacaacagggtgcttaacaagcgttattggtcatgaaagattgattaa 1840309  T
Q  116 taatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840310 taatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatcc 1840409  T
Q  216 gatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctttcaaccgatcacct 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840410 gatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctttcaaccgatcacct 1840502  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 294
Target Start/End: Complemental strand, 1832697 - 1832524
Alignment:
Q  118 atggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatccga 217  Q
    |||||| |||||||||| |||||||||||||| ||||||||| ||||| ||||||  || |||| ||||||||| ||||||||||||     |||||| |    
T  1832697 atggaaaatgttcgggtgtagggtgttgccaaattgatattcatcctaaaatgaggaatgtaagcatacaagcttctaatttcaacact---tcatccaa 1832601  T
Q  218 tttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctt 294  Q
     |||||||||||| ||||||||| || |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  1832600 attttgtagctattcatttgttgttaggaatggtagctatgatttttcatccactcatttatcacaaggtttacctt 1832524  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 104 - 282
Target Start/End: Original strand, 1866231 - 1866409
Alignment:
Q  104 aagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaac 203  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |  ||||||| ||| |||||  ||||||||||    
T  1866231 aagattgattgataatgaaacatgttcgggtatagggtgctgccaagttgatattcctcctaaaatgtggaatataagcatagaagcttataatttcaac 1866330  T
Q  204 aaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcac 282  Q
     |||| |||||    | ||||||||||||||||||||  |||||||||||||||| ||||||  ||| |||||||||||    
T  1866331 caaaattcatcactatattgtagctatgcatttgttgtcaagaatggtagctatactttttctaccaatcatttatcac 1866409  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 9164155 - 9164081
Alignment:
Q  117 aatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct 191  Q
    |||||||||||||||||||| || ||||| |||||||||||||| ||||  |||||  |||||||| ||||||||    
T  9164155 aatggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtgtacaagct 9164081  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 9158037 - 9157966
Alignment:
Q  120 ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct 191  Q
    ||||||||||||||||| || ||||| |||||||||||||| ||||  |||||  ||||||||||| |||||    
T  9158037 ggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtatagaagct 9157966  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 9175990 - 9175916
Alignment:
Q  124 catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt 198  Q
    ||||||||||||| || ||||| |||||||||||||| ||||  |||||  |||||| |||||||||| ||||||    
T  9175990 catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaagcttctaatt 9175916  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 9203019 - 9202945
Alignment:
Q  124 catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt 198  Q
    ||||||||||||| || ||||| |||||||||||||| ||||  |||||  |||||| ||||||| || ||||||    
T  9203019 catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt 9202945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 9220487 - 9220418
Alignment:
Q  120 ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaag 189  Q
    ||||||||||||||||| || ||||| |||||||||||||| | ||  |||||  |||||||| ||||||    
T  9220487 ggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaag 9220418  T

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