View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_4 (Length: 558)
Name: NF1734_high_4
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 13 - 540
Target Start/End: Complemental strand, 26576595 - 26576068
Alignment:
| Q |
13 |
gcagcacagattgtaaacatagtccagtccttgtgggaagagtggaaggctgtgcagaattatgcagcaaatagtatgacagtggatagcagtgatgcgg |
112 |
Q |
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| T |
26576595 |
gcagcacagattgtaaacatagtccagtccttgtgggaagagtggaaggctgtgcagaattatgcagcaaatagtatgacagtggatagcagtgatgcgg |
26576496 |
T |
|
| Q |
113 |
ctggcgggtctgcagtgagtactagtagagagtttcaatacttcgttgatgctagtttttat-gattagaa---atttttgcgaaggctttatcaggatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
26576495 |
ctggcgggtctgcagtgagtactagtagagagtttcaatacttcgttgatgctagtttttatcgattagaaggaatttttgcgaaggctttatcaggatg |
26576396 |
T |
|
| Q |
209 |
gaattgtccgcagctgctagtttgtgaaggtgaggcaatggcgctcgtaaatgctattagacaggttcaagagattggactgtcaagtgtcactttttta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26576395 |
gaattgtccgcagctgctagtttgtgaaggtgaggcaatggcgctcgtaaacgct----gacaggttcaagagattggactgtcaagtgtcactttttta |
26576300 |
T |
|
| Q |
309 |
tctgacactcaaattctgtttaacagtatcgaaggtagtggtgaaggtacatcggagtttaacactcttgtttctagtattagaagtatattaggcttga |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26576299 |
tctgacactcaaattttgtttaacagtatcgaaggtagaggtgaaggtgcatcggagtttaacactcttgtttctagtattagaagtatattaggcttga |
26576200 |
T |
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| Q |
409 |
attgcaactttaaggtgaagtttgtttagaggccaacgaagatggctgctcacttgttagctaaaggggttgcagttattttgtatgctagtggccaaat |
508 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26576199 |
attgcaactttaaggtgaagtttgtttggaggccaacgaagatggctgctcacttgttagctaaaggggttgcggttattttgtatgctagtggccaaat |
26576100 |
T |
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| Q |
509 |
attttattaagttcctctttgtattcatcctt |
540 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26576099 |
attttattaagttcctctttgtattcatcctt |
26576068 |
T |
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