View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_40 (Length: 296)
Name: NF1734_high_40
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 56165643 - 56165895
Alignment:
| Q |
1 |
tctccattgttgcgtgttcatttcgcgcttagaaagacaccgtgctggttggtcaaacataccatcatatacacttggactcctcaagctactgaaagaa |
100 |
Q |
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| T |
56165643 |
tctccattgttgcgtgttcatttcgcgcttagaaagacaccgtgctggtcggtcaaacacaccatcatatacacttggactcctcaagctactgaaagaa |
56165742 |
T |
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| Q |
101 |
gcactccaatcaacgtggcggttgagtttcgtttgttcagtgtagagaaattgaataacagctctcactgcaggcaaccgttcgttttgagctgcatgaa |
200 |
Q |
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| T |
56165743 |
gcactccaatcaatgtggcggttgagtttcgtttgttcagagtagagaaattgaataacagctctcactgcaggcaaccgttcgttttgagctgcatgaa |
56165842 |
T |
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| Q |
201 |
gtgaggcttctggtgtgagtttcctgctatcaatcaactttcctttcttgctt |
253 |
Q |
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| T |
56165843 |
gtgaggcttctggtgtgagtttcctgctatcaatcaactttcctttcttgctt |
56165895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 2837359 - 2837311
Alignment:
| Q |
179 |
cgttcgttttgagctgcatgaagtgaggcttctggtgtgagtttcctgc |
227 |
Q |
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| T |
2837359 |
cgttcgttttgtgctgcatgaagtgatgcttcttgtgttagtttcctgc |
2837311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 44263907 - 44264135
Alignment:
| Q |
7 |
ttgttgcgtgttcatttcgcgcttagaaagacaccgtgctggttggtcaaacataccatcatatacacttggactcctcaagctactgaaagaagcactc |
106 |
Q |
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| T |
44263907 |
ttgttgtgtgttcatttcgcgcttagaaagacaccgtgcttgtgggtccaacacaccaccgtatccacttggactcctcaagctactgaaagaagcactc |
44264006 |
T |
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| Q |
107 |
caatcaacgtggcggttgagtttcgtttgttcagtgtagagaaattgaataacagctctcactgcaggcaaccgttcgttttgagctgcatgaagtgagg |
206 |
Q |
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||||||||||| |||||||||||||||||||| | | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44264007 |
caatcaacgtgacggttgagtttcgtttgttcggagaagagaacttgaataacagctctca---caggcaaccgttcgttttgagctgcatgaagtgagg |
44264103 |
T |
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| Q |
207 |
cttctggtgtgagtttcctgctatcaatcaac |
238 |
Q |
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| T |
44264104 |
cttctggtgtgagtttcctgctatcaatcaac |
44264135 |
T |
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