View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_42 (Length: 286)
Name: NF1734_high_42
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 32639043 - 32639181
Alignment:
| Q |
57 |
tcatcaatctaaattaaaccaatccacatgtcaacttcctaccctccaattactcataactgtttgtcatgggccccacatcaactttgataagga--ac |
154 |
Q |
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| T |
32639043 |
tcatcaatctaaattaaaccaatccacatgtcaacttcctaccctccaattactcataactgtttctcatgggccccacatcaactttgataaggaacac |
32639142 |
T |
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| Q |
155 |
atcacatgttaggaccaaggaacataatacataatccac |
193 |
Q |
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| T |
32639143 |
atcacatgttaggaccaaggaacataatacataatccac |
32639181 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 32639221 - 32639261
Alignment:
| Q |
232 |
ccttaactgaggatttgctccttgtgctgatggaaagattg |
272 |
Q |
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| T |
32639221 |
ccttaactgaggatttgctccttgtgctgatggaaagattg |
32639261 |
T |
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