View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1734_high_5 (Length: 557)

Name: NF1734_high_5
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1734_high_5
NF1734_high_5
[»] chr6 (27 HSPs)
chr6 (12-543)||(33303712-33304243)
chr6 (82-416)||(33387462-33387792)
chr6 (217-419)||(33644925-33645127)
chr6 (126-419)||(9166095-9166384)
chr6 (103-292)||(33261922-33262113)
chr6 (58-392)||(33409248-33409580)
chr6 (58-295)||(33398336-33398571)
chr6 (217-402)||(33285030-33285215)
chr6 (99-290)||(33358226-33358424)
chr6 (160-295)||(28870672-28870806)
chr6 (172-289)||(33407756-33407873)
chr6 (172-292)||(33396806-33396926)
chr6 (175-412)||(33271219-33271456)
chr6 (359-419)||(33358496-33358556)
chr6 (116-199)||(31563400-31563483)
chr6 (160-291)||(33281096-33281227)
chr6 (350-403)||(33057135-33057188)
chr6 (153-295)||(33056935-33057074)
chr6 (312-393)||(31563226-31563307)
chr6 (345-412)||(33398651-33398718)
chr6 (345-419)||(28870548-28870622)
chr6 (495-543)||(9166472-9166520)
chr6 (345-389)||(33262175-33262219)
chr6 (495-543)||(33262337-33262385)
chr6 (499-545)||(31563071-31563117)
chr6 (495-543)||(33285305-33285353)
chr6 (507-543)||(33387877-33387913)
[»] chr2 (3 HSPs)
chr2 (155-419)||(17441268-17441538)
chr2 (172-265)||(17446955-17447048)
chr2 (476-543)||(17441111-17441178)
[»] scaffold0428 (3 HSPs)
scaffold0428 (99-292)||(5691-5886)
scaffold0428 (160-291)||(13025-13156)
scaffold0428 (345-393)||(5945-5993)
[»] scaffold1408 (2 HSPs)
scaffold1408 (154-292)||(2-140)
scaffold1408 (345-393)||(199-247)
[»] chr4 (3 HSPs)
chr4 (159-245)||(31499608-31499694)
chr4 (495-543)||(31499304-31499352)
chr4 (230-295)||(31485290-31485355)


Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 12 - 543
Target Start/End: Original strand, 33303712 - 33304243
Alignment:
Q  12 gagatgaacatcatgtcaatgctcttcattgcagattgtattttgcaggttgagactcttcatcaccttcttgtgatctatctgttgtttcttctctgtg 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33303712 gagatgaacataatgtcaatgctcttcattgcagattgtattttgcaggttgagactcttcatcaccttcttgtgatccatctgttgtttcttctctgtg 33303811  T
Q  112 aagtttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33303812 aagtttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagccaagaaat 33303911  T
Q  212 tttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33303912 tttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccaccgatacccgcaactcttcacctccaaactaaaatcttcaccctc 33304011  T
Q  312 aaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304012 aaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattg 33304111  T
Q  412 agaattacggtagcactcctacagctcatcctaatcaatttcttatcggtccactcttgagcaaatggaaacatccaacaatcaggtgccatggaaaata 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304112 agaattacggtagcactcctacagctcatcctaatcaatttcttatcggtccactcttgagcaaatggaaacatccaacaatcaggtgccatggaaaata 33304211  T
Q  512 ccgcacaacatagaaagccaatgatataattg 543  Q
    ||||||||||||||||||||||||||||||||    
T  33304212 ccgcacaacatagaaagccaatgatataattg 33304243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 82 - 416
Target Start/End: Original strand, 33387462 - 33387792
Alignment:
Q  82 ttgtgatctatctgttgtttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaat 179  Q
    |||||||| ||||||||||||||||| ||| | |  ||||||||  ||| |||||||||||||||| |      |||| | |||||||| ||||||||||    
T  33387462 ttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgt------ggttgtagttgtgtcccatcttcaat 33387555  T
Q  180 tgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaa 279  Q
    ||||||| |||| ||||||  ||| ||| ||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  33387556 tgccaaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaa 33387655  T
Q  280 ctcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggt 379  Q
    ||||||||||||| ||  ||| |||  |||| |||||| | ||||  ||| ||| ||||||||    |||||||||| ||||||||||||||||||||||    
T  33387656 ctcttcacctccatacccaaagcttgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggt 33387755  T
Q  380 gacttgatttggtcataacaagacctccattgagaat 416  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33387756 gacttgatttggtcgtaacaagacctccattgagaat 33387792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 217 - 419
Target Start/End: Complemental strand, 33645127 - 33644925
Alignment:
Q  217 tgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaa 316  Q
    ||||||||||||||||||||||| | ||| ||||||| |||||||||||  |||||||| ||||||||||||| || ||  | | |||| | ||||||||    
T  33645127 tgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcaccttcatacccagaccttccctctcaaaaa 33645028  T
Q  317 tattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaat 416  Q
    | | ||||| |||| || |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  33645027 tgtcaaaatagattcttccaaattcattataggaatctcgagggaagtagattatccataggtgacttgatttggtcgtaataagaccaccatcgagaat 33644928  T
Q  417 tac 419  Q
    |||    
T  33644927 tac 33644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 126 - 419
Target Start/End: Original strand, 9166095 - 9166384
Alignment:
Q  126 tgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatc 225  Q
    ||||| |||||||||||||||| |||| |||| ||| ||| ||||||| | |||||||||| |||||||| ||| ||| ||  | ||||| |||||||||    
T  9166095 tgagacgaatgattcttgttctggttc-ggttgtggctgtctctcatcctaaattgccaaagtcttgcacgtccgagccaatgatttttcgtgattcatc 9166193  T
Q  226 attgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaaaat 325  Q
       ||||||||||| ||||| ||||||| |||||||||||  || || || ||| ||||||||| || |   ||| ||||||||  || ||| | |||||    
T  9166194 ---gttaagttgaactcttgtaggtcttgtttacatacccaacggtatccacaagtcttcaccttcatatccaaaccttcaccccgaataatgtcaaaat 9166290  T
Q  326 ggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaattac 419  Q
    |||||||| ||||||||   |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||  |||||| ||||||||    
T  9166291 ggatttttccaaattcatcgtaggactctcgggggaggtagattatccataggtgactggatttggtcaaaacaagaaatccattcagaattac 9166384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 103 - 292
Target Start/End: Original strand, 33261922 - 33262113
Alignment:
Q  103 ttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttccc 200  Q
    |||||||||||||  ||||||||  |||| |||||||||||||||||  ||  |||| |||||||||||||||||||||||||||| |||| || |||      
T  33261922 ttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcga 33262021  T
Q  201 agcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctcca 292  Q
    ||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||   ||||||||||||||||||||||||    
T  33262022 agccaaggatttttcatgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaatgatacccgcaactcttcacctcca 33262113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 58 - 392
Target Start/End: Original strand, 33409248 - 33409580
Alignment:
Q  58 aggttgagactcttcatcaccttcttgtgatctatctgttgtttcttctctgt--gaagt--ttatgactcttgagatgaatgattcttgttcttgttcc 153  Q
    ||||||| ||||||| | |||||||||||||| |||||||||||||||| | |  |||||  ||||||||  ||||||||||||||||||||||          
T  33409248 aggttgaaactcttcttgaccttcttgtgatccatctgttgtttcttctttcttcgaagtagttatgacttgtgagatgaatgattcttgttct------ 33409341  T
Q  154 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtctt 253  Q
    |||| ||||||||||||  |||||||||||| | |||| ||||||  ||| ||| ||||||| |||||||||||||| |||||||| | ||| |||||||    
T  33409342 ggttgtggttgtgtctcgccttcaattgccataatcttacacttctgagccaaggaattttcatgattcatcattgtgaagttgaacttttgtaggtctt 33409441  T
Q  254 ctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactc 353  Q
     |||||||||||  |||||||||||||| |||||||| ||||  | | ||||||||| | ||   ||   | |||   || || |  ||  |||||||||    
T  33409442 gtttacatacccaacgatacccgcaacttttcacctcaaaacccacaacttcaccctgataacatttcgcacggagagttccataaacatcataggactc 33409541  T
Q  354 tcgggggaagtagattatccataggtgacttgatttggt 392  Q
    |||||||||||||| || |||||||||||||||||||||    
T  33409542 tcgggggaagtagactagccataggtgacttgatttggt 33409580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 58 - 295
Target Start/End: Original strand, 33398336 - 33398571
Alignment:
Q  58 aggttgagactcttcatcaccttcttgtgatctatctgttgtttcttc--tctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttcc 153  Q
    ||||||| ||||||| | |||||||||||||| |||||||||||||||  |||  |||||  ||||||||  ||||||||||||||||||||||          
T  33398336 aggttgaaactcttcgtgaccttcttgtgatccatctgttgtttcttccttcttcgaagtagttatgacttgtgagatgaatgattcttgttct------ 33398429  T
Q  154 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtctt 253  Q
    |||| ||||||||||||  |||||||||||| | |||| |||||   ||||||| ||||||| |||||||||||||| ||||| || | | | |||||||    
T  33398430 ggttgtggttgtgtctcgccttcaattgccataatcttacacttttgagcaaaggaattttcatgattcatcattgtgaagttcaactttcgtaggtctt 33398529  T
Q  254 ctttacatacccgccgatacccgcaactcttcacctccaaac 295  Q
     |||||||||||  ||||||||||||||||||||||| ||||    
T  33398530 gtttacatacccaacgatacccgcaactcttcacctcaaaac 33398571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 217 - 402
Target Start/End: Original strand, 33285030 - 33285215
Alignment:
Q  217 tgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaa 316  Q
    ||||||||||||||||| ||||| ||||| ||||||| |||||||||||  ||||| || ||||| |||||||||| ||  |||||||||||| ||| ||    
T  33285030 tgattcatcattgttaaattgaactcttgtaggtcttgtttacatacccaacgatatccacaactgttcacctccatacccaaatcttcacccccaacaa 33285129  T
Q  317 tattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaaga 402  Q
    | | | ||  |||||||||||||| |  |||||||||||  | || ||||||||||||||| ||||||||||||||| ||| ||||    
T  33285130 tgtaacaactgattttttcaaatttatcataggactctctagagaggtagattatccatagatgacttgatttggtcgtaataaga 33285215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 33358226 - 33358424
Alignment:
Q  99 tttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtg------tctcatcttcaattgccaaattct 190  Q
    |||||||||||||||||  ||||||||  |||||||||||||||||||||| ||| |||||  ||||| |      ||| |||||||||||||||| |||    
T  33358226 tttcttctctgtgaagtaattatgacttgtgagatgaatgattcttgttctagttgcggttgcggttgcggttgcgtctaatcttcaattgccaaaatct 33358325  T
Q  191 tgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctc 290  Q
    |||| |||||||  |||| |||||| |||||||||||||| |||||||| ||||| ||||||| |||| | ||||  |||||| | ||||||||||||||    
T  33358326 tgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaactcttgtaggtcttgttta-aaacccaacgatactcacaactcttcacctc 33358424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 28870806 - 28870672
Alignment:
Q  160 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttac 259  Q
    ||||||||| ||||||||||| ||||| ||||| |||||  ||| ||| ||||||  || |||||||||||||||||||| ||||| ||||||| |||||    
T  28870806 ggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaactcttgtaggtcttgtttac 28870708  T
Q  260 atacccgccgatacccgcaactcttcacctccaaac 295  Q
    ||||||  ||||||||||||||||||||||| ||||    
T  28870707 atacccaacgatacccgcaactcttcacctcaaaac 28870672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 33407756 - 33407873
Alignment:
Q  172 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgat 271  Q
    ||||||||| ||||| |||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||  | ||    
T  33407756 tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33407855  T
Q  272 acccgcaactcttcacct 289  Q
    ||||||| ||||||||||    
T  33407856 acccgcagctcttcacct 33407873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 33396806 - 33396926
Alignment:
Q  172 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgat 271  Q
    ||||||||| ||||| |||||||||||  | | ||| ||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||  | ||    
T  33396806 tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33396905  T
Q  272 acccgcaactcttcacctcca 292  Q
    ||| ||| |||||||||||||    
T  33396906 acctgcagctcttcacctcca 33396926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 175 - 412
Target Start/End: Original strand, 33271219 - 33271456
Alignment:
Q  175 tcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacc 274  Q
    |||||||||||| |||| || ||   ||| ||| ||||||| ||||||| ||||||||  ||||| ||||| ||||||| |||||||| ||  |||||||    
T  33271219 tcaattgccaaaatcttacattttggagccaaggaattttcgtgattcagcattgttatattgaactcttgtaggtcttgtttacatatccaacgatacc 33271318  T
Q  275 cgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaa-aatggattttttcaaattcactataggactctcgggggaagtagattatcc 373  Q
    |||||||||||||||||| ||  ||  ||||||||  | | ||  ||| ||  ||| |||||||||| |  ||||||| |||| |||| | |||| ||||    
T  33271319 cgcaactcttcacctccatacccaagccttcaccc-aacacatcgtaacaacagatgttttcaaatttatcataggaccctcgagggaggaagatcatcc 33271417  T
Q  374 ataggtgacttgatttggtcataacaagacctccattga 412  Q
    |||||||||||||||||||| ||| ||||| ||| ||||    
T  33271418 ataggtgacttgatttggtcgtaataagacttcctttga 33271456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 33358496 - 33358556
Alignment:
Q  359 ggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaattac 419  Q
    |||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||    
T  33358496 ggaagtagattatccacaggtgacttgatttgggcgtaataagacctccattgagaattac 33358556  T

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Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 31563483 - 31563400
Alignment:
Q  116 ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcacttcc 199  Q
    ||||||||  ||||||||| |||| |||||||  || | ||| ||||||||||||||||||||||||||||||||| |||||||    
T  31563483 ttatgacttatgagatgaaagattattgttctgcttgcagttgtggttgtgtctcatcttcaattgccaaattctttcacttcc 31563400  T

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Target: chr6; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 33281096 - 33281227
Alignment:
Q  160 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttac 259  Q
    ||||||||| ||||||||||| ||||| |||||||||||  ||| ||| ||  ||| |||||||| ||||||||  |||| ||||| ||||||| |||||    
T  33281096 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtttac 33281195  T
Q  260 atacccgccgatacccgcaactcttcacctcc 291  Q
    |||  |  |||| | |||||||||||||||||    
T  33281196 atattcaacgatgcacgcaactcttcacctcc 33281227  T

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Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 33057135 - 33057188
Alignment:
Q  350 actctcgggggaagtagattatccataggtgacttgatttggtcataacaagac 403  Q
    |||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  33057135 actctcggggtaagtagataatccataggtgacttgatttggtcgtaacaagac 33057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 33056935 - 33057074
Alignment:
Q  153 cggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtct 252  Q
    ||||||||||||||||||||||||||||| |||| | ||||||||   ||  ||| ||||||  |||||||| |   |||| ||||||||||| |  |||    
T  33056935 cggttctggttgtgtctcatcttcaattgtcaaaattttgcactttggagttaaggaatttttgtgattcatga---ttaaattgaattcttgtatatct 33057031  T
Q  253 tctttacatacccgccgatacccgcaactcttcacctccaaac 295  Q
    | |||||||||||  ||||| ||||||||||  ||||||||||    
T  33057032 tgtttacatacccaacgataaccgcaactctcgacctccaaac 33057074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 31563307 - 31563226
Alignment:
Q  312 aaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtc 393  Q
    |||||| | |||||||||||||  |||||||  |   ||| |||| ||||||||||||||||||||||||||||||||||||    
T  31563307 aaaaatgtcaaaatggatttttcgaaattcatgacgtgaccctcgagggaagtagattatccataggtgacttgatttggtc 31563226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 412
Target Start/End: Original strand, 33398651 - 33398718
Alignment:
Q  345 ataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattga 412  Q
    |||||| |||||||||| ||||  |||||||||||||||||||| |||| |||||||| ||| |||||    
T  33398651 ataggaatctcgggggatgtaggctatccataggtgacttgattcggtcgtaacaagatctctattga 33398718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 28870622 - 28870548
Alignment:
Q  345 ataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgagaattac 419  Q
    |||| |||||||||||||||||| ||  ||||||||||||||||||||| ||| |||| ||| || || ||||||    
T  28870622 atagtactctcgggggaagtagactagtcataggtgacttgatttggtcgtaataagatctctatcgataattac 28870548  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 9166472 - 9166520
Alignment:
Q  495 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattg 543  Q
    |||||||||||| ||||| |||||||||| |||||||||||||| ||||    
T  9166472 aggtgccatggagaatactgcacaacatacaaagccaatgatattattg 9166520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 33262175 - 33262219
Alignment:
Q  345 ataggactctcgggggaagtagattatccataggtgacttgattt 389  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||    
T  33262175 ataggactctcggggtaagtagattagccacaggtgacttgattt 33262219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 33262337 - 33262385
Alignment:
Q  495 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattg 543  Q
    ||||| ||||||||||||  |||||||||||||||||||||||| ||||    
T  33262337 aggtgtcatggaaaatacaacacaacatagaaagccaatgatattattg 33262385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 545
Target Start/End: Complemental strand, 31563117 - 31563071
Alignment:
Q  499 gccatggaaaataccgcacaacatagaaagccaatgatataattgat 545  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  31563117 gccacggaaaatactgcacaacatacaaagccaatgatatcattgat 31563071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 543
Target Start/End: Original strand, 33285305 - 33285353
Alignment:
Q  495 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattg 543  Q
    |||||||| |||||| || |||||||||| |||||||||||||| ||||    
T  33285305 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattg 33285353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 33387877 - 33387913
Alignment:
Q  507 aaataccgcacaacatagaaagccaatgatataattg 543  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  33387877 aaatactgcacaacatagaaagccaatgatattattg 33387913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 155 - 419
Target Start/End: Complemental strand, 17441538 - 17441268
Alignment:
Q  155 gttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttc 254  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||| |||   ||||| ||||||||||||||||||||||| ||||| |||||||     
T  17441538 gttctggttgtgtctcatcttcaattgccaaaatcttgcacttctgagccaaggttttttcgtgattcatcattgttaagttgaactcttgtaggtcttg 17441439  T
Q  255 tttacatacccgccgatacccgcaactcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactct 354  Q
    |||||||||||  ||||||||||||||||||||||||| ||  ||| |||  ||||||||||| | |||| |||||| |  |||| ||  |||||||||     
T  17441438 tttacatacccaacgatacccgcaactcttcacctccatacccaaagcttgcccctcaaaaatttcaaaacggatttctcgaaatgcatgataggactca 17441339  T
Q  355 cgggggaagtagattatccataggtgacttgatttgg------tcataacaagacctccattgagaattac 419  Q
    | | |||||||||||||||||| ||||||||||||||      || ||||||||| |||||||||||||||    
T  17441338 cagtggaagtagattatccatatgtgacttgatttggttgttatcgtaacaagacttccattgagaattac 17441268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 17447048 - 17446955
Alignment:
Q  172 tcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacataccc 265  Q
    ||||||||| | ||| |||||||||||  ||| ||| ||||||| | ||||| ||||||||||||||| ||||| ||||||| |||||||||||    
T  17447048 tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaactcttgtaggtcttgtttacataccc 17446955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 543
Target Start/End: Complemental strand, 17441178 - 17441111
Alignment:
Q  476 atggaaacatccaacaatcaggtgccatggaaaataccgcacaacatagaaagccaatgatataattg 543  Q
    |||||||| ||| || || |||||||||||||||||| |||||||||| ||| |||||||||| ||||    
T  17441178 atggaaacctcccacgatgaggtgccatggaaaatactgcacaacatacaaaaccaatgatattattg 17441111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 99 - 292
Target Start/End: Original strand, 5691 - 5886
Alignment:
Q  99 tttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaattgccaaattcttgcact 196  Q
    |||||||||||||||||  ||||||||  |||| |||||||||||||||||  ||  |||| |||||||||||||||||||||||||||| |||| || |    
T  5691 tttcttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatt 5790  T
Q  197 tcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctcca 292  Q
    ||  ||| ||| | ||||| ||||||||||||||||||||||| ||||| | || || |||||||||||  ||||||||||||| |||||| ||||    
T  5791 tcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttttgtttacatacccaacgatacccgcaacacttcacatcca 5886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 291
Target Start/End: Complemental strand, 13156 - 13025
Alignment:
Q  160 ggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttac 259  Q
    ||||||||| ||||||||||| ||||| |||||||||||  ||| ||| ||  ||| |||||||| ||||||||  |||| ||||| ||||||| |||||    
T  13156 ggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttgtttac 13057  T
Q  260 atacccgccgatacccgcaactcttcacctcc 291  Q
    |||  |  |||| | |||||||||||||||||    
T  13056 atattcaacgatgcacgcaactcttcacctcc 13025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 5945 - 5993
Alignment:
Q  345 ataggactctcgggggaagtagattatccataggtgacttgatttggtc 393  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||    
T  5945 atagtactctcggggaaagtagactagccataggtgacttgatttggtc 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 2 - 140
Alignment:
Q  154 ggttctggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttgcaggtctt 253  Q
    |||| |||||||||||||||||||||||||||| |||| || |||  ||| ||| | ||||| ||||||||||||||||||||||| ||||| | || ||    
T  2 ggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagtttt 101  T
Q  254 ctttacatacccgccgatacccgcaactcttcacctcca 292  Q
     |||||||||||  ||||||||||||| |||||| ||||    
T  102 gtttacatacccaacgatacccgcaacacttcacatcca 140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 199 - 247
Alignment:
Q  345 ataggactctcgggggaagtagattatccataggtgacttgatttggtc 393  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||    
T  199 atagtactctcggggaaagtagactagccataggtgacttgatttggtc 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 31499694 - 31499608
Alignment:
Q  159 tggttgtgtctcatcttcaattgccaaattcttgcacttcccagcaaagaaattttcttgattcatcattgttaagttgaattcttg 245  Q
    |||||||| |||||||||||||||||||  ||||| ||| ||||| |||  ||||   |||||||||||||||||||| || |||||    
T  31499694 tggttgtgcctcatcttcaattgccaaagacttgcgctttccagctaaggtatttctgtgattcatcattgttaagttcaactcttg 31499608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 543
Target Start/End: Complemental strand, 31499352 - 31499304
Alignment:
Q  495 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattg 543  Q
    ||||||||| |||||||| |||||||||| |||||||||||||| ||||    
T  31499352 aggtgccatagaaaatactgcacaacatacaaagccaatgatattattg 31499304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 31485355 - 31485290
Alignment:
Q  230 ttaagttgaattcttgcaggtcttctttacatacccgccgatacccgcaactcttcacctccaaac 295  Q
    |||||||||| |||||||| || |  ||| ||||||  |||||||||||||||||||| |||||||    
T  31485355 ttaagttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcacttccaaac 31485290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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