View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_53 (Length: 257)
Name: NF1734_high_53
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_53 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 7767262 - 7767486
Alignment:
| Q |
17 |
tcgtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtct |
116 |
Q |
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| T |
7767262 |
tcgtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtct |
7767361 |
T |
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| Q |
117 |
agaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaa |
216 |
Q |
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| T |
7767362 |
agaaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaa |
7767461 |
T |
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| Q |
217 |
gtttctatggagaaacagcttatgt |
241 |
Q |
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| T |
7767462 |
gtttctatggagaaacagcttatgt |
7767486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 7778234 - 7778456
Alignment:
| Q |
19 |
gtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctag |
118 |
Q |
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| T |
7778234 |
gtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgtaactgtggtcgatcttccgacactaatgagccatcgattgatttgagtctag |
7778333 |
T |
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| Q |
119 |
aaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagt |
218 |
Q |
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| T |
7778334 |
aaatagaaaatgcagatactctttcaagtgctttagattctttcacaacggtagaagatattgatgcaaagtttaaatgtgagggctgcaatgaagaagt |
7778433 |
T |
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| Q |
219 |
ttctatggagaaacagcttatgt |
241 |
Q |
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| T |
7778434 |
ttctatggagaaacagcttatgt |
7778456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 7773399 - 7773621
Alignment:
| Q |
19 |
gtaaagaaagtttttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctag |
118 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||| ||||||| |
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| T |
7773399 |
gtaaagaaagtttttggaggtagtttggttagcatgcttcggtgttgtaactgtggttgttcttctgacattaatgagccattgattgattttagtctag |
7773498 |
T |
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| Q |
119 |
aaatagaaaatgtagaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagt |
218 |
Q |
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| T |
7773499 |
aaatagaaaatgtagatactctttcaagtgctttagaatctttcactatggtggaacacattgacgcgaagtttaaatgcgagggctgcaacgaagaagt |
7773598 |
T |
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| Q |
219 |
ttctatggagaaacagcttatgt |
241 |
Q |
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| T |
7773599 |
gtctatggagaaacaacttatgt |
7773621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 12753863 - 12753676
Alignment:
| Q |
54 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
153 |
Q |
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| T |
12753863 |
gcttcggtgttgtaactgtagccgctcttccatcactaatgagccgttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattg |
12753764 |
T |
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| Q |
154 |
gattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagcttatgt |
241 |
Q |
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| T |
12753763 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgt |
12753676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 12816823 - 12816636
Alignment:
| Q |
54 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgagccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
153 |
Q |
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| T |
12816823 |
gcttcggtgttgtaactgtagccgctcttccatcactaatgagcagttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattg |
12816724 |
T |
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| Q |
154 |
gattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagcttatgt |
241 |
Q |
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| T |
12816723 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgt |
12816636 |
T |
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