View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_55 (Length: 251)
Name: NF1734_high_55
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26635133 - 26634982
Alignment:
| Q |
1 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaactgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26635133 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaactgc |
26635034 |
T |
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| Q |
101 |
ctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
152 |
Q |
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| T |
26635033 |
ctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
26634982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 26627720 - 26627574
Alignment:
| Q |
1 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaactgc |
100 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||| || ||||||| ||||||||||||||| |
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| T |
26627720 |
ttgaatcttttggtataatttaaaagtgctatgaggttgaattgatgtttttggaatgtatgagg-----atcctccattttttgagcataggcaactgc |
26627626 |
T |
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| Q |
101 |
ctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
152 |
Q |
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| T |
26627625 |
ctcccaaaaagatttgtaagttgagttggggacaaacaaatttgcctttttc |
26627574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 26612230 - 26612116
Alignment:
| Q |
1 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaactgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||||||||||||||| |
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| T |
26612230 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgtttttggaaggtaggaggggaggatcctctattttatcagcataggcaactgc |
26612131 |
T |
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| Q |
101 |
ctcccaaaagcattt |
115 |
Q |
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|||||||||| |||| |
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| T |
26612130 |
ctcccaaaagtattt |
26612116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 26648237 - 26648088
Alignment:
| Q |
1 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaactgc |
100 |
Q |
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|
|||||| ||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||||||||| || ||||||||||||| ||||||| | |
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| T |
26648237 |
ttgaatatttaggtataatctaaaagtgttactaagttgaattgatgtttttggaacgtaggaggggaggatcctctattttttcagcattggcaactac |
26648138 |
T |
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| Q |
101 |
ctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgccttttt |
151 |
Q |
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| T |
26648137 |
ctcccaaaagcatttgcatgttgggt-taggacaaagaaatttgccttttt |
26648088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26715689 - 26715574
Alignment:
| Q |
1 |
ttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaactgc |
100 |
Q |
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|
|||||| ||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||||||||| || ||||||||||||| | ||||| | |
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| T |
26715689 |
ttgaatatttaggtataatctaaaagtgttactaagttgaattgatgtttttggaacgtaggaggggaggatcctctattttttcagcattgacaactac |
26715590 |
T |
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| Q |
101 |
ctcccaaaagcatttg |
116 |
Q |
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|||||||||||||||| |
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| T |
26715589 |
ctcccaaaagcatttg |
26715574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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