View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_56 (Length: 250)
Name: NF1734_high_56
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38882466 - 38882230
Alignment:
| Q |
1 |
caataacccctggcttgtattcattctttggagctgctgcaactcccacctaattcaaattcaatcannnnnnnnnnnnnnnnnnnaaatttcataatcg |
100 |
Q |
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| T |
38882466 |
caataacccctggcttgtattcactctttggagctgctgcaactcccacctaattcaaattcaatcaacacacacacacacaca--aaatttcataatcg |
38882369 |
T |
|
| Q |
101 |
cacacgaaaaacaatagcaaaatatgcaaaccgttttgggtcccgacgatgaagaggctgaaacgcagaactgacgtatacgaattccattagaacaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38882368 |
cacacgaaaaacaatagcaaaatatgcaaaccgttttgggtcccgacgatgaagaggctgaaacgcagaactgacgtttacgaattccattagaacaaag |
38882269 |
T |
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| Q |
201 |
cggtggaacaccaccaacaacaatacctaccgccttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
38882268 |
cggtggaacaccaccaacaacaatacctaccgccttcat |
38882230 |
T |
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