View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_59 (Length: 250)
Name: NF1734_high_59
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28322247 - 28322473
Alignment:
| Q |
1 |
acaattctccatgatgtttgcctaatgtgtggtaaaattagcaacgaccattaaccaaaatgaccaaacaaaccatggggag-atatctataatatactt |
99 |
Q |
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| T |
28322247 |
acaattctccatgatgtttgcctaatgtgtggtaaaattagcaacgaccattaaccaaaatgaccaaacaaaccatgggggggatatctataatatactt |
28322346 |
T |
|
| Q |
100 |
caacaaattctctaaaaacaaactctaatatttaccctttacctagtatttttccttgaacaataaacacaatgttttaactacctaaggtgttttacaa |
199 |
Q |
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| T |
28322347 |
caacaaattctctaaaaacaaactctaatatttaccctttacctagtctttttccttgaacaataaacacaatgttttaaccacctaaggtgttttacaa |
28322446 |
T |
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| Q |
200 |
ccctatcatttatcccaaaagatctca |
226 |
Q |
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| T |
28322447 |
ccctatcatttatcccaaaagatctca |
28322473 |
T |
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Back To:
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 9177417 - 9177464
Alignment:
| Q |
97 |
cttcaacaaattctctaaaaacaaactctaatatttaccctttaccta |
144 |
Q |
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||||||||| |||||||||||||||||||||| | ||| ||||||||| |
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| T |
9177417 |
cttcaacaagttctctaaaaacaaactctaatttctactctttaccta |
9177464 |
T |
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