View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_64 (Length: 247)
Name: NF1734_high_64
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_64 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4023 - 4254
Alignment:
| Q |
1 |
ccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4023 |
ccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaagaaagcaaaaaagatggctggt |
4122 |
T |
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| Q |
101 |
gtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaacctgatacacggacatcagagaccagctcttgtgctactgagcatc |
200 |
Q |
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| T |
4123 |
gtgtcacaatcacttcccaaggatgaatcaactgatggtcagaattctagcaaacctgatacacggacatcagagactggctcttgtgctactgagcatc |
4222 |
T |
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| Q |
201 |
caagtccaaaacaaatggctattgaaggatat |
232 |
Q |
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| T |
4223 |
caagtccaaaacaaatggctattgaaggatat |
4254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 21447513 - 21447282
Alignment:
| Q |
1 |
ccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21447513 |
ccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaagaaagcaaaaaagatggctggt |
21447414 |
T |
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| Q |
101 |
gtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaacctgatacacggacatcagagaccagctcttgtgctactgagcatc |
200 |
Q |
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| T |
21447413 |
gtgtcacaatcacttcccaaggatgaatcaactgatggtcagaattctagcaaacctgatacacggacatcagagactggctcttgtgctactgagcatc |
21447314 |
T |
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| Q |
201 |
caagtccaaaacaaatggctattgaaggatat |
232 |
Q |
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| T |
21447313 |
caagtccaaaacaaatggctattgaaggatat |
21447282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 40685104 - 40685257
Alignment:
| Q |
1 |
ccccttgttgtgggcttctacctaccatgcaggcgagtgtttggatccggttgctgttgctgaagcgaaggccaaaaggaaagcaaaaaagatggctggt |
100 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||| |
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| T |
40685104 |
ccccttgttatgggcctctacctaccatgcaggcgagtgcttggatcctgttgctgttgcagaagcaaaggcaaaaaggagagcgaaaaagatggctggt |
40685203 |
T |
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| Q |
101 |
gtgtcacaatcacttcccaaggatgaagcaactgatggtcagaattctagcaaa |
154 |
Q |
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|| ||||| ||||| || |||||||||| |||||| ||||| | ||||||||| |
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| T |
40685204 |
gtatcacagtcactacctaaggatgaagtaactgaaggtcacacctctagcaaa |
40685257 |
T |
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