View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_66 (Length: 238)
Name: NF1734_high_66
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4681274 - 4681050
Alignment:
| Q |
1 |
ttctcattcagcgtctattgcagttttaagaagattgggtgtgaaaggtgttgagatacgaaagccagaacaacttctcaccattaattcccttatcatc |
100 |
Q |
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| T |
4681274 |
ttctcattcagtgtctattgcagttttaagaagattgggtgtgaaaggtgttgagatacgaaaaccagaacaacttctcaccattaattcccttatcatc |
4681175 |
T |
|
| Q |
101 |
cctggtggtgaaagcaccactatggctaaactcgctcaatacttcaacctggtataatta--ctctcaacttcttattttcagttga--ttttgggggtt |
196 |
Q |
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| T |
4681174 |
cctggtggtgaaagcaccactatggctaaactcgctcaatacttcaacctggtataaatactctctcaacttcttattttcagtggattttttgggggtt |
4681075 |
T |
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| Q |
197 |
ctcaattcaaaacttagcatgctct |
221 |
Q |
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||||||||||||||||||||||||| |
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| T |
4681074 |
ctcaattcaaaacttagcatgctct |
4681050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 2581380 - 2581534
Alignment:
| Q |
16 |
tattgcagttttaagaagattgggtgtgaaaggtgttgagatacgaaagccagaacaacttctcaccattaattcccttatcatccctggtggtgaaagc |
115 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2581380 |
tattgtagttttaagaagactgggtgtgaaaggtgttgagatacgaaaaccataacaacttctcaccattaattcccttatcatccctggtggtgaaagc |
2581479 |
T |
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| Q |
116 |
accactatggctaaactcgctcaatacttcaacctggtataattactctcaactt |
170 |
Q |
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||||||||||||||| |||| |||| ||||||||||||||| ||| | |||||| |
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| T |
2581480 |
accactatggctaaaagcgctgaatatttcaacctggtataaatacacacaactt |
2581534 |
T |
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