View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_68 (Length: 237)
Name: NF1734_high_68
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_68 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 3846 - 3632
Alignment:
| Q |
7 |
tttttatttctttctaattttcaggttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgtttgccctttcaacc |
106 |
Q |
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| T |
3846 |
tttttctttctttctaattttcaggttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgtttgccctttcaacc |
3747 |
T |
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| Q |
107 |
tgcatgtagggataggaatgggttcttattttgggatgcatttcatccaactgaagctggaaatagtattattggtagaagagcttacaatgctcaatct |
206 |
Q |
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| T |
3746 |
tgcatgtagggataggaatgggttcttattttgggatgcatttcatccaactgaagctggaaacagtgttattggtagaagagcttacaatgctcaatct |
3647 |
T |
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| Q |
207 |
gcatcagatgcttac |
221 |
Q |
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||||||||||||||| |
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| T |
3646 |
gcatcagatgcttac |
3632 |
T |
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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 7617088 - 7617287
Alignment:
| Q |
21 |
taattttcaggttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgtttgccctttcaacctgcatgtagggata |
120 |
Q |
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| T |
7617088 |
taattttcaggcataagggttacaaatgaagggtgttgtggaataggaagaaacaatggtcaaattacatgtttgccccttcaaaccccatgtagtaata |
7617187 |
T |
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| Q |
121 |
ggaatgggttcttattttgggatgcatttcatccaactgaagctggaaatagtattattggtagaagagcttacaatgctcaatctgcatcagatgctta |
220 |
Q |
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| T |
7617188 |
ggaatgagtacctattttgggatgcatttcacccaactgaggttggcaacactataattggtaggagagcttacaatgctcaatctgaatcagatgctta |
7617287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 3067903 - 3067843
Alignment:
| Q |
32 |
ttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgt |
92 |
Q |
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| T |
3067903 |
ttttagtgttacaaatgttggatgttgtggagtaggaaggaaaaatggtcaaattatatgt |
3067843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 36361640 - 36361491
Alignment:
| Q |
21 |
taattttcaggttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgtttgccctttcaacctgcatgtagggata |
120 |
Q |
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| T |
36361640 |
taattttcaggttttagtgttacaaatgctggatgctgtggagtaggaagaaacaatggtcaatttacatgtctaccattgcaaacaccatgtgagaaca |
36361541 |
T |
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| Q |
121 |
ggaatgggttcttattttgggatgcatttcatccaactgaagctggaaat |
170 |
Q |
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| | | || || ||||||||||| |||||||||||||||||||||||| |
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| T |
36361540 |
gaagagagtatttgttttgggatgcttttcatccaactgaagctggaaat |
36361491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 36648317 - 36648379
Alignment:
| Q |
30 |
ggttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgt |
92 |
Q |
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| T |
36648317 |
ggttttagtgttataaatgttggatgccgtggagtaggaaggaacaatggtcaaattacatgt |
36648379 |
T |
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