View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1734_high_69 (Length: 236)
Name: NF1734_high_69
Description: NF1734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1734_high_69 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 26635316 - 26635519
Alignment:
| Q |
15 |
attcatccatatttacacatctagacccaagaacacttagataagatcgtaaaagatctttttagtataaaaagaaattttgtgttcgaattccgtcctg |
114 |
Q |
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| T |
26635316 |
attcatccatatttacacatcttgacccaagaatacttagataagatcgtaaaagatcttttcagtataaaaagaagttttgtgttcgaatttaattctg |
26635415 |
T |
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| Q |
115 |
aggtgttttgtgttcgaattcaatcttgatatacaagagtgttaaaaaatttaatgaaaagttttgccactatttgtggtcatacccaactcgatttagt |
214 |
Q |
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| T |
26635416 |
aggtgttttgtgttcgaattcagtcttgatatacaagagtgttaaaaaatttaatgaaaagttttgccactatttatggtcatacccaacttgatttagt |
26635515 |
T |
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| Q |
215 |
cttt |
218 |
Q |
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|||| |
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| T |
26635516 |
cttt |
26635519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26612731 - 26612939
Alignment:
| Q |
1 |
gatttcataaaaat---attcatccatatttacacatctagacccaagaacacttagataagatcgtaaaagatctttttagtataaaaagaaattttgt |
97 |
Q |
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| T |
26612731 |
gatttcataaaaatcacattcatccatatttacacatctagacacaagaacacttagataagatcgtaaaagatcttttcagtataaaaagaagtt--gt |
26612828 |
T |
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| Q |
98 |
gttcgaattccgtcctgaggtgttttgtgttcgaattcaatcttgatatacaagagtgttaaaaaatttaatgaaaagttttgccactatttgtggtcat |
197 |
Q |
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||| |||||| ||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26612829 |
gtttgaattcagtcctgaagtgttttgtgtttgaattcagtcttgaaatacaagagtgttaaaaaatttaatgaaaagttttgccactatttgcggtcat |
26612928 |
T |
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| Q |
198 |
acccaactcga |
208 |
Q |
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||||||||||| |
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| T |
26612929 |
acccaactcga |
26612939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 26627924 - 26628019
Alignment:
| Q |
12 |
aatattcatccatatttacacatctagacccaagaacacttagataagatcgtaaaagatctttttagtataaaaagaaattttgtgttcgaattc |
107 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
26627924 |
aatattcatccatatttacgcatctagacccaagaacacttagataaaatcatttaagatcttttcagtataagaagaagttttgtgttcgaattc |
26628019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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